Levi Waldron

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Curtis HuttenhowerDepartment of Biostatistics, Harvard School of Public HealthVerified email at hsph.harvard.edu
Nicola SegataDepartment CIBIO, University of TrentoVerified email at unitn.it
Igor JurisicaVerified email at ai.utoronto.ca
Giovanni ParmigianiProfessor Department of Data Science, DFCIVerified email at dfci.harvard.edu
Michael BirrerProfessor Medicine HMSVerified email at partners.org
Markus RiesterNovartis Institutes for Biomedical ResearchVerified email at novartis.com
Marcel M. Ramos PérezCUNY Graduate School of Public Health and Health PolicyVerified email at sph.cuny.edu
Benjamin Haibe-KainsScientist (Principal Investigator), Princess Margaret Cancer Centre, University Health NetworkVerified email at uhnresearch.ca
Ludwig GeistlingerCenter for Computational Biomedicine, Harvard Medical SchoolVerified email at hms.harvard.edu
Fei-Fei LiuUniversity Health NetworkVerified email at rmp.uhn.ca
Patricia Pintor dos ReisSão Paulo State University (UNESP)Verified email at unesp.br
Aedin CulhaneDept of Data Science, Dana-Farber Cancer Institute/ Dept of Biostatistics, Harvard TH Chan SchoolVerified email at ds.dfci.harvard.edu
Shuji OginoProf (Pathol & Epidemiol), Harvard; Broad Institute; Dana-Farber HCC Immunology Prog; MPE Chief, BWHVerified email at bwh.harvard.edu
X C MorganUniversity of OtagoVerified email at otago.ac.nz
Jennifer Beam DowdAssociate Professor of Demography & Population Health, University of OxfordVerified email at sociology.ox.ac.uk
Lucas SchifferSection of Computational Biomedicine, Boston University School of MedicineVerified email at bu.edu
Yujin HoshidaUniversity of Texas Southwestern Medical CenterVerified email at utsouthwestern.edu
Eric Alan FranzosaSenior Research Scientist / Harvard T. H. Chan School of Public HealthVerified email at hsph.harvard.edu
Sean DavisNational Cancer Institute, National Institutes of HealthVerified email at mail.nih.gov
Denis NashCUNY Institute for Implementation Science in Population Health, CUNY School of Public Health, CUNYVerified email at sph.cuny.edu

Levi Waldron

City University of New York School of Public Health

Verified email at sph.cuny.edu - Homepage

Bioinformatics


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Metagenomic biomarker discovery and explanation N Segata, J Izard, L Waldron, D Gevers, L Miropolsky, WS Garrett, ... Genome biology 12 (6), 1-18, 2011	5621	2011
Orchestrating high-throughput genomic analysis with Bioconductor W Huber, VJ Carey, R Gentleman, S Anders, M Carlson, BS Carvalho, ... Nature methods 12 (2), 115, 2015	2044	2015
Metagenomic microbial community profiling using unique clade-specific marker genes N Segata, L Waldron, A Ballarini, V Narasimhan, O Jousson, ... Nature methods 9 (8), 811-814, 2012	1256	2012
Stem cell gene expression programs influence clinical outcome in human leukemia K Eppert, K Takenaka, ER Lechman, L Waldron, B Nilsson, P Van Galen, ... Nature medicine 17 (9), 1086-1093, 2011	873	2011
Composition of the adult digestive tract bacterial microbiome based on seven mouth surfaces, tonsils, throat and stool samples N Segata, SK Haake, P Mannon, KP Lemon, L Waldron, D Gevers, ... Genome biology 13 (6), 1-18, 2012	665	2012
Assessment of colorectal cancer molecular features along bowel subsites challenges the conception of distinct dichotomy of proximal versus distal colorectum M Yamauchi, T Morikawa, A Kuchiba, Y Imamura, ZR Qian, R Nishihara, ... Gut 61 (6), 847-854, 2012	484	2012
A guide to enterotypes across the human body: meta-analysis of microbial community structures in human microbiome datasets O Koren, D Knights, A Gonzalez, L Waldron, N Segata, R Knight, ... PLoS Comput Biol 9 (1), e1002863, 2013	448	2013
Relating the metatranscriptome and metagenome of the human gut EA Franzosa, XC Morgan, N Segata, L Waldron, J Reyes, AM Earl, ... Proceedings of the National Academy of Sciences 111 (22), E2329-E2338, 2014	438	2014
Comprehensive MicroRNA profiling for head and neck squamous cell carcinomas ABY Hui, M Lenarduzzi, T Krushel, L Waldron, M Pintilie, W Shi, ... Clinical cancer research 16 (4), 1129-1139, 2010	428	2010
MicroRNA-301 mediates proliferation and invasion in human breast cancer W Shi, K Gerster, NM Alajez, J Tsang, L Waldron, M Pintilie, AB Hui, ... Cancer research 71 (8), 2926-2937, 2011	259	2011
Meta-analysis of fecal metagenomes reveals global microbial signatures that are specific for colorectal cancer J Wirbel, PT Pyl, E Kartal, K Zych, A Kashani, A Milanese, JS Fleck, ... Nature medicine 25 (4), 679-689, 2019	249	2019
Machine learning meta-analysis of large metagenomic datasets: tools and biological insights E Pasolli, DT Truong, F Malik, L Waldron, N Segata PLoS computational biology 12 (7), e1004977, 2016	237	2016
mRNA transcript quantification in archival samples using multiplexed, color-coded probes PP Reis, L Waldron, RS Goswami, W Xu, Y Xuan, B Perez-Ordonez, ... BMC biotechnology 11 (1), 1-10, 2011	236	2011
Metagenomic analysis of colorectal cancer datasets identifies cross-cohort microbial diagnostic signatures and a link with choline degradation AM Thomas, P Manghi, F Asnicar, E Pasolli, F Armanini, M Zolfo, ... Nature medicine 25 (4), 667-678, 2019	201	2019
Risk prediction for late-stage ovarian cancer by meta-analysis of 1525 patient samples M Riester, W Wei, L Waldron, AC Culhane, L Trippa, E Oliva, S Kim, ... JNCI: Journal of the National Cancer Institute 106 (5), 2014	158	2014
curatedOvarianData: clinically annotated data for the ovarian cancer transcriptome BF Ganzfried, M Riester, B Haibe-Kains, T Risch, S Tyekucheva, I Jazic, ... Database 2013, 2013	144	2013
Racial/ethnic disparities in genomic sequencing DE Spratt, T Chan, L Waldron, C Speers, FY Feng, OO Ogunwobi, ... JAMA oncology 2 (8), 1070-1074, 2016	142	2016
Associations between host gene expression, the mucosal microbiome, and clinical outcome in the pelvic pouch of patients with inflammatory bowel disease XC Morgan, B Kabakchiev, L Waldron, AD Tyler, TL Tickle, R Milgrom, ... Genome biology 16 (1), 1-15, 2015	130	2015
Genotype and time of day shape the Populus drought response O Wilkins, L Waldron, H Nahal, NJ Provart, MM Campbell The Plant Journal 60 (4), 703-715, 2009	130	2009
Accessible, curated metagenomic data through ExperimentHub E Pasolli, L Schiffer, P Manghi, A Renson, V Obenchain, DT Truong, ... Nature methods 14 (11), 1023, 2017	129	2017

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