Henk van den Toorn
Henk van den Toorn
Bioinformatician at Biomolecular Mass Spectrometry and Proteomics Group, Utrecht University
Verified email at uu.nl
Title
Cited by
Cited by
Year
Toward full peptide sequence coverage by dual fragmentation combining electron-transfer and higher-energy collision dissociation tandem mass spectrometry
CK Frese, AFM Altelaar, H van den Toorn, D Nolting, J Griep-Raming, ...
Analytical chemistry 84 (22), 9668-9673, 2012
1822012
Quantitative and qualitative proteome characteristics extracted from in-depth integrated genomics and proteomics analysis
TY Low, S van Heesch, H van den Toorn, P Giansanti, A Cristobal, ...
Cell reports 5 (5), 1469-1478, 2013
1102013
The PRoteomics IDEntification (PRIDE) Converter 2 framework: an improved suite of tools to facilitate data submission to the PRIDE database and the ProteomeXchange consortium
RG Côté, J Griss, JA Dianes, R Wang, JC Wright, HWP van den Toorn, ...
Molecular & Cellular Proteomics 11 (12), 1682-1689, 2012
942012
Enhancing the identification of phosphopeptides from putative basophilic kinase substrates using Ti (IV) based IMAC enrichment
H Zhou, TY Low, ML Hennrich, H van der Toorn, T Schwend, H Zou, ...
Molecular & Cellular Proteomics 10 (10), 2011
922011
An augmented multiple-protease-based human phosphopeptide atlas
P Giansanti, TT Aye, H van den Toorn, M Peng, B van Breukelen, ...
Cell reports 11 (11), 1834-1843, 2015
702015
Personalized proteome profiles of healthy and tumor human colon organoids reveal both individual diversity and basic features of colorectal cancer
A Cristobal, HWP van den Toorn, M van de Wetering, H Clevers, ...
Cell Reports 18 (1), 263-274, 2017
572017
Deep proteome profiling of Trichoplax adhaerens reveals remarkable features at the origin of metazoan multicellularity
JH Ringrose, HW Van Den Toorn, M Eitel, H Post, P Neerincx, ...
Nature communications 4 (1), 1-7, 2013
502013
Ultra acidic strong cation exchange enabling the efficient enrichment of basic phosphopeptides
ML Hennrich, HWP van den Toorn, V Groenewold, AJR Heck, ...
Analytical chemistry 84 (4), 1804-1808, 2012
492012
Selectivity in enrichment of cAMP-dependent protein kinase regulatory subunits type I and type II and their interactors using modified cAMP affinity resins
TT Aye, S Mohammed, HWP van den Toorn, TAB van Veen, ...
Molecular & Cellular Proteomics 8 (5), 1016-1028, 2009
482009
Effect of chemical modifications on peptide fragmentation behavior upon electron transfer induced dissociation
ML Hennrich, PJ Boersema, H van den Toorn, N Mischerikow, AJR Heck, ...
Analytical chemistry 81 (18), 7814-7822, 2009
452009
qcML: an exchange format for quality control metrics from mass spectrometry experiments
M Walzer, LE Pernas, S Nasso, W Bittremieux, S Nahnsen, ...
Molecular & Cellular Proteomics 13 (8), 1905-1913, 2014
432014
StatQuant: a post-quantification analysis toolbox for improving quantitative mass spectrometry
B van Breukelen, HWP van den Toorn, MM Drugan, AJR Heck
Bioinformatics 25 (11), 1472-1473, 2009
412009
Toward an optimized workflow for middle-down proteomics
A Cristobal, F Marino, H Post, HWP van den Toorn, S Mohammed, ...
Analytical chemistry 89 (6), 3318-3325, 2017
402017
Characterization of Biases in Phosphopeptide Enrichment by Ti4+-Immobilized Metal Affinity Chromatography and TiO2 Using a Massive Synthetic Library and …
L Matheron, H van den Toorn, AJR Heck, S Mohammed
Analytical chemistry 86 (16), 8312-8320, 2014
352014
RockerBox: analysis and filtering of massive proteomics search results
HWP van den Toorn, J Muñoz, S Mohammed, R Raijmakers, AJR Heck, ...
Journal of proteome research 10 (3), 1420-1424, 2011
322011
Deep proteome profiling of circulating granulocytes reveals bactericidal/permeability-increasing protein as a biomarker for severe atherosclerotic coronary stenosis
OB Bleijerveld, P Wijten, S Cappadona, EA McClellan, AN Polat, ...
Journal of Proteome Research 11 (11), 5235-5244, 2012
202012
Targeted scx based peptide fractionation for optimal sequencing by collision induced, and electron transfer dissociation
HWP van den Toorn, S Mohammed, JW Gouw, B van Breukelen, ...
J. Proteomics Bioinform 1 (8), 379-88, 2008
192008
The early metazoan Trichoplax adhaerens possesses a functional O-GlcNAc system
N Selvan, D Mariappa, HWP Van Den Toorn, AJR Heck, AT Ferenbach, ...
Journal of Biological Chemistry 290 (19), 11969-11982, 2015
182015
Unravelling the Neospora caninum secretome through the secreted fraction (ESA) and quantification of the discharged tachyzoite using high-resolution mass spectrometry-based …
L Pollo-Oliveira, H Post, ML Acencio, N Lemke, H van den Toorn, ...
Parasites & vectors 6 (1), 1-14, 2013
172013
Comparative phosphoproteomic analysis of checkpoint recovery identifies new regulators of the DNA damage response
VA Halim, M Alvarez-Fernandez, YJ Xu, M Aprelia, HWP van den Toorn, ...
Science signaling 6 (272), rs9-rs9, 2013
142013
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