Henk van den Toorn
Henk van den Toorn
Bioinformatician at Biomolecular Mass Spectrometry and Proteomics Group, Utrecht University
Geverifieerd e-mailadres voor uu.nl
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Toward full peptide sequence coverage by dual fragmentation combining electron-transfer and higher-energy collision dissociation tandem mass spectrometry
CK Frese, AFM Altelaar, H van den Toorn, D Nolting, J Griep-Raming, ...
Analytical chemistry 84 (22), 9668-9673, 2012
1742012
Quantitative and qualitative proteome characteristics extracted from in-depth integrated genomics and proteomics analysis
TY Low, S van Heesch, H van den Toorn, P Giansanti, A Cristobal, ...
Cell reports 5 (5), 1469-1478, 2013
1092013
The PRoteomics IDEntification (PRIDE) Converter 2 framework: an improved suite of tools to facilitate data submission to the PRIDE database and the ProteomeXchange consortium
RG Côté, J Griss, JA Dianes, R Wang, JC Wright, HWP van den Toorn, ...
Molecular & Cellular Proteomics 11 (12), 1682-1689, 2012
922012
Enhancing the identification of phosphopeptides from putative basophilic kinase substrates using Ti (IV) based IMAC enrichment
H Zhou, TY Low, ML Hennrich, H van der Toorn, T Schwend, H Zou, ...
Molecular & Cellular Proteomics 10 (10), 2011
912011
An augmented multiple-protease-based human phosphopeptide atlas
P Giansanti, TT Aye, H van den Toorn, M Peng, B van Breukelen, ...
Cell reports 11 (11), 1834-1843, 2015
672015
Personalized proteome profiles of healthy and tumor human colon organoids reveal both individual diversity and basic features of colorectal cancer
A Cristobal, HWP van den Toorn, M van de Wetering, H Clevers, ...
Cell reports 18 (1), 263-274, 2017
502017
Deep proteome profiling of Trichoplax adhaerens reveals remarkable features at the origin of metazoan multicellularity
JH Ringrose, HW Van Den Toorn, M Eitel, H Post, P Neerincx, ...
Nature communications 4 (1), 1-7, 2013
482013
Ultra acidic strong cation exchange enabling the efficient enrichment of basic phosphopeptides
ML Hennrich, HWP van den Toorn, V Groenewold, AJR Heck, ...
Analytical chemistry 84 (4), 1804-1808, 2012
482012
Selectivity in enrichment of cAMP-dependent protein kinase regulatory subunits type I and type II and their interactors using modified cAMP affinity resins
TT Aye, S Mohammed, HWP van den Toorn, TAB van Veen, ...
Molecular & Cellular Proteomics 8 (5), 1016-1028, 2009
472009
Effect of chemical modifications on peptide fragmentation behavior upon electron transfer induced dissociation
ML Hennrich, PJ Boersema, H van den Toorn, N Mischerikow, AJR Heck, ...
Analytical chemistry 81 (18), 7814-7822, 2009
452009
qcML: an exchange format for quality control metrics from mass spectrometry experiments
M Walzer, LE Pernas, S Nasso, W Bittremieux, S Nahnsen, ...
Molecular & Cellular Proteomics 13 (8), 1905-1913, 2014
442014
StatQuant: a post-quantification analysis toolbox for improving quantitative mass spectrometry
B van Breukelen, HWP van den Toorn, MM Drugan, AJR Heck
Bioinformatics 25 (11), 1472-1473, 2009
412009
Toward an optimized workflow for middle-down proteomics
A Cristobal, F Marino, H Post, HWP van den Toorn, S Mohammed, ...
Analytical chemistry 89 (6), 3318-3325, 2017
392017
Characterization of Biases in Phosphopeptide Enrichment by Ti4+-Immobilized Metal Affinity Chromatography and TiO2 Using a Massive Synthetic Library and …
L Matheron, H van den Toorn, AJR Heck, S Mohammed
Analytical chemistry 86 (16), 8312-8320, 2014
342014
RockerBox: analysis and filtering of massive proteomics search results
HWP van den Toorn, J Muñoz, S Mohammed, R Raijmakers, AJR Heck, ...
Journal of proteome research 10 (3), 1420-1424, 2011
322011
Deep proteome profiling of circulating granulocytes reveals bactericidal/permeability-increasing protein as a biomarker for severe atherosclerotic coronary stenosis
OB Bleijerveld, P Wijten, S Cappadona, EA McClellan, AN Polat, ...
Journal of proteome research 11 (11), 5235-5244, 2012
202012
The early metazoan Trichoplax adhaerens possesses a functional O-GlcNAc system
N Selvan, D Mariappa, HWP Van Den Toorn, AJR Heck, AT Ferenbach, ...
Journal of Biological Chemistry 290 (19), 11969-11982, 2015
182015
Targeted scx based peptide fractionation for optimal sequencing by collision induced, and electron transfer dissociation
HWP van den Toorn, S Mohammed, JW Gouw, B van Breukelen, ...
J proteomics Bioinform 1 (8), 379-388, 2008
172008
Unravelling the Neospora caninum secretome through the secreted fraction (ESA) and quantification of the discharged tachyzoite using high-resolution mass spectrometry-based …
L Pollo-Oliveira, H Post, ML Acencio, N Lemke, H van den Toorn, ...
Parasites & vectors 6 (1), 335, 2013
152013
Comparative phosphoproteomic analysis of checkpoint recovery identifies new regulators of the DNA damage response
VA Halim, M Alvarez-Fernandez, YJ Xu, M Aprelia, HWP van den Toorn, ...
Sci. Signal. 6 (272), rs9-rs9, 2013
122013
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Artikelen 1–20