Roy Chaudhuri
Roy Chaudhuri
Lecturer in Bioinformatics, University of Sheffield
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The pangenome structure of Escherichia coli: comparative genomic analysis of E. coli commensal and pathogenic isolates
DA Rasko, MJ Rosovitz, GSA Myers, EF Mongodin, WF Fricke, P Gajer, ...
Journal of bacteriology 190 (20), 6881-6893, 2008
Escherichia coli K-12: a cooperatively developed annotation snapshot—2005
M Riley, T Abe, MB Arnaud, MKB Berlyn, FR Blattner, RR Chaudhuri, ...
Nucleic acids research 34 (1), 1-9, 2006
The origins of acquired immune deficiency syndrome viruses: where and when?
PM Sharp, E Bailes, RR Chaudhuri, CM Rodenburg, MO Santiago, ...
Philosophical Transactions of the Royal Society of London. Series B …, 2001
Comprehensive identification of essential Staphylococcus aureus genes using Transposon-Mediated Differential Hybridisation (TMDH)
RR Chaudhuri, AG Allen, PJ Owen, G Shalom, K Stone, M Harrison, ...
BMC genomics 10 (1), 1-18, 2009
Genomic analysis of secretion systems
MJ Pallen, RR Chaudhuri, IR Henderson
Current opinion in microbiology 6 (5), 519-527, 2003
The evolution of the Escherichia coli phylogeny
RR Chaudhuri, IR Henderson
Infection, Genetics and Evolution 12 (2), 214-226, 2012
A commensal gone bad: complete genome sequence of the prototypical enterotoxigenic Escherichia coli strain H10407
LC Crossman, RR Chaudhuri, SA Beatson, TJ Wells, M Desvaux, ...
Journal of bacteriology 192 (21), 5822-5831, 2010
Comprehensive assignment of roles for Salmonella typhimurium genes in intestinal colonization of food-producing animals
RR Chaudhuri, E Morgan, SE Peters, SJ Pleasance, DL Hudson, ...
PLoS Genet 9 (4), e1003456, 2013
x BASE2: a comprehensive resource for comparative bacterial genomics
RR Chaudhuri, NJ Loman, LAS Snyder, CM Bailey, DJ Stekel, MJ Pallen
Nucleic acids research 36 (suppl_1), D543-D546, 2007
Complete genome sequence and comparative metabolic profiling of the prototypical enteroaggregative Escherichia coli strain 042
RR Chaudhuri, M Sebaihia, JL Hobman, MA Webber, DL Leyton, ...
PloS one 5 (1), e8801, 2010
Bacterial FHA domains: neglected players in the phospho-threonine signalling game?
M Pallen, R Chaudhuri, A Khan
Trends in microbiology 10 (12), 556-563, 2002
Down-regulation of key virulence factors makes the Salmonella enterica serovar Typhimurium rfaH mutant a promising live-attenuated vaccine candidate
G Nagy, V Danino, U Dobrindt, M Pallen, R Chaudhuri, L Emödy, ...
Infection and immunity 74 (10), 5914-5925, 2006
Bacterial flagellar diversity in the post-genomic era
MJ Pallen, CW Penn, RR Chaudhuri
Trends in microbiology 13 (4), 143-149, 2005
The ETT2 gene cluster, encoding a second type III secretion system from Escherichia coli, is present in the majority of strains but has undergone widespread mutational attrition
CP Ren, RR Chaudhuri, A Fivian, CM Bailey, M Antonio, WM Barnes, ...
Journal of bacteriology 186 (11), 3547-3560, 2004
Structure and function of BamE within the outer membrane and the β‐barrel assembly machine
TJ Knowles, DF Browning, M Jeeves, R Maderbocus, S Rajesh, P Sridhar, ...
EMBO reports 12 (2), 123-128, 2011
Regulators encoded in the Escherichia coli type III secretion system 2 gene cluster influence expression of genes within the locus for enterocyte effacement in …
L Zhang, RR Chaudhuri, C Constantinidou, JL Hobman, MD Patel, ...
Infection and immunity 72 (12), 7282-7293, 2004
Comprehensive identification of Salmonella enterica serovar typhimurium genes required for infection of BALB/c mice
RR Chaudhuri, SE Peters, SJ Pleasance, H Northen, C Willers, ...
PLoS Pathog 5 (7), e1000529, 2009
Genomic signatures of human and animal disease in the zoonotic pathogen Streptococcus suis
LA Weinert, RR Chaudhuri, J Wang, SE Peters, J Corander, T Jombart, ...
Nature communications 6 (1), 1-10, 2015
Phylogenetic comparisons reveal multiple acquisitions of the toxin genes by enterotoxigenic Escherichia coli strains of different evolutionary lineages
SM Turner, RR Chaudhuri, ZD Jiang, H DuPont, C Gyles, CW Penn, ...
Journal of clinical microbiology 44 (12), 4528-4536, 2006
xBASE, a collection of online databases for bacterial comparative genomics
RR Chaudhuri, MJ Pallen
Nucleic acids research 34 (suppl_1), D335-D337, 2006
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