Shao-shan Carol Huang
Shao-shan Carol Huang
Assistant Professor, New York University
Verified email at nyu.edu - Homepage
Title
Cited by
Cited by
Year
Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape
RC O’Malley, SC Huang, L Song, MG Lewsey, A Bartlett, JR Nery, M Galli, ...
Cell 165 (5), 1280-1292, 2016
7132016
Processing and subcellular trafficking of ER-tethered EIN2 control response to ethylene gas
H Qiao, Z Shen, SC Huang, RJ Schmitz, MA Urich, SP Briggs, JR Ecker
Science 338 (6105), 390-393, 2012
3942012
Epigenomic Diversity in a Global Collection of Arabidopsis thaliana Accessions
T Kawakatsu, SC Huang, F Jupe, E Sasaki, RJ Schmitz, MA Urich, ...
Cell 166 (2), 492-505, 2016
3922016
Cryptochromes Interact Directly with PIFs to Control Plant Growth in Limiting Blue Light
UV Pedmale, SC Huang, M Zander, BJ Cole, J Hetzel, K Ljung, PAB Reis, ...
Cell 164 (1-2), 233–245, 2016
3252016
Temporal transcriptional response to ethylene gas drives growth hormone cross-regulation in Arabidopsis
KN Chang, S Zhong, MT Weirauch, G Hon, M Pelizzola, H Li, SC Huang, ...
eLife 2, 2013
2842013
A transcription factor hierarchy defines an environmental stress response network
L Song, SC Huang, A Wise, R Castanon, JR Nery, H Chen, M Watanabe, ...
Science 354 (6312), aag1550, 2016
2522016
Integrating proteomic, transcriptional, and interactome data reveals hidden components of signaling and regulatory networks
SC Huang, E Fraenkel
Science Signalling 2 (81), ra40, 2009
1982009
Pseudomonas aeruginosa Genome Database and PseudoCAP: facilitating community-based, continually updated, genome annotation
GL Winsor, R Lo, SJH Sui, KSE Ung, S Huang, D Cheng, WKH Ching, ...
Nucleic acids research 33 (suppl_1), D338-D343, 2005
1652005
Mapping genome-wide transcription-factor binding sites using DAP-seq.
A Bartlett, RC O'Malley, SC Huang, M Galli, JR Nery, A Gallavotti, ...
Nature protocols 12 (8), 1659-1672, 2017
1382017
Simultaneous reconstruction of multiple signaling pathways via the prize-collecting Steiner forest problem
N Tuncbag, A Braunstein, A Pagnani, SSC Huang, J Chayes, C Borgs, ...
Journal of computational biology 20 (2), 124-136, 2013
1062013
SteinerNet: a web server for integrating ‘omic’data to discover hidden components of response pathways
N Tuncbag, S McCallum, SC Huang, E Fraenkel
Nucleic Acids Research 40 (W1), W505-W509, 2012
772012
Mapping transcription factor interactome networks using HaloTag protein arrays
J Yazaki, M Galli, AY Kim, K Nito, F Aleman, KN Chang, AR Carvunis, ...
Proceedings of the National Academy of Sciences 113 (29), E4238-E4247, 2016
592016
Linking Proteomic and Transcriptional Data through the Interactome and Epigenome Reveals a Map of Oncogene-induced Signaling
SC Huang, DC Clarke, SJC Gosline, A Labadorf, CR Chouinard, ...
PLOS Computational Biology 9 (2), e1002887, 2013
542013
Piecing together cis‐regulatory networks: insights from epigenomics studies in plants
SC Huang, JR Ecker
Wiley Interdisciplinary Reviews: Systems Biology and Medicine 10 (3), e1411, 2018
122018
Cannabinoid exposure in rat adolescence reprograms the initial behavioral, molecular, and epigenetic response to cocaine
M Scherma, JS Qvist, A Asok, CH Shao-shan, P Masia, M Deidda, YB Wei, ...
Proceedings of the National Academy of Sciences 117 (18), 9991-10002, 2020
102020
Identification of over-represented combinations of transcription factor binding sites in sets of co-expressed genes
S Huang, DL Fulton, DJ Arenillas, P Perco, SJ Ho Sui, JR Mortimer, ...
Advances in Bioinformatics and Computational Biology 3, 247-56, 2006
92006
Response to perspective “Separation anxiety: An analysis of ethylene-induced cleavage of EIN2
H Qiao, Z Shen, SC Huang, RJ Schmitz, MA Urich, SP Briggs, JR Ecker
Plant signaling & behavior 8 (8), e25037, 2013
52013
A constraint optimization framework for discovery of cellular signaling and regulatory networks
SC Huang
Massachusetts Institute of Technology, 2011
52011
Big Data to the Bench: Transcriptome Analysis for Undergraduates
C Procko, S Morrison, C Dunar, S Mills, B Maldonado, C Cockrum, ...
CBE—Life Sciences Education 18 (2), ar19, 2019
42019
Swimming upstream: identifying proteomic signals that drive transcriptional changes using the interactome and multiple “-omics” datasets
SS Huang, E Fraenkel
Methods in cell biology 110, 57-80, 2012
42012
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Articles 1–20