Shawn T O'Neil
Shawn T O'Neil
Faculty Research Assistant, Oregon State University
Verified email at cgrb.oregonstate.edu - Homepage
Title
Cited by
Cited by
Year
Population-level transcriptome sequencing of nonmodel organisms Erynnis propertius and Papilio zelicaon
S T O'Neil, JDK Dzurisin, RD Carmichael, NF Lobo, SJ Emrich, ...
BMC genomics 11 (1), 310, 2010
1342010
Assessing De Novo transcriptome assembly metrics for consistency and utility
S T O’Neil, SJ Emrich
BMC genomics 14 (1), 465, 2013
1182013
A comparative study of ripening among berries of the grape cluster reveals an altered transcriptional programme and enhanced ripening rate in delayed berries
S Gouthu, ST O’Neil, Y Di, M Ansarolia, M Megraw, LG Deluc
Journal of experimental botany 65 (20), 5889-5902, 2014
412014
Haplotype and minimum-chimerism consensus determination using short sequence data
S T O'Neil, SJ Emrich
BMC genomics 13 (S2), S4, 2012
232012
Gene expression in closely related species mirrors local adaptation: consequences for responses to a warming world
ST O'Neil, JDK Dzurisin, CM Williams, NF Lobo, JK Higgins, JM Deines, ...
Molecular ecology 23 (11), 2686-2698, 2014
202014
Newsvendor problems with demand shocks and unknown demand distributions
S O'Neil, X Zhao, D Sun, JC Wei
Decision Sciences 47 (1), 125-156, 2016
162016
The characterization of the Phlebotomus papatasi transcriptome
J Abrudan, M Ramalho‐Ortig„o, S O'Neil, G Stayback, M Wadsworth, ...
Insect molecular biology 22 (2), 211-232, 2013
152013
Two Theobroma cacao genotypes with contrasting pathogen tolerance show aberrant transcriptional and ROS responses after salicylic acid treatment
AS Fister, ST O’Neil, Z Shi, Y Zhang, BM Tyler, MJ Guiltinan, ...
Journal of experimental botany 66 (20), 6245-6258, 2015
112015
Robust haplotype reconstruction of eukaryotic read data with Hapler
ST O'Neil, SJ Emrich
2011 IEEE 1st International Conference on Computational Advances in Bio and†…, 2011
92011
Comparing online learning algorithms to stochastic approaches for the multi-period newsvendor problem
S O'Neil, A Chaudhary
2008 Proceedings of the Tenth Workshop on Algorithm Engineering and†…, 2008
82008
A k-mer based transcriptomics approach for antisense drug discovery targeting the Ewing’s family of tumors
AJ Annalora, S O’Neil, JD Bushman, JE Summerton, CB Marcus, ...
Oncotarget 9 (55), 30568, 2018
32018
Implementing Persistent O (1) Stacks and Queues in R
ST O’Neil
R JOURNAL 7 (1), 118-126, 2015
22015
A Primer for Computational Biology
ST O'Neil
Oregon State University Press, 2017
12017
The topology aware file distribution problem
ST O’Neil, A Chaudhary, DZ Chen, H Wang
Journal of Combinatorial Optimization 26 (4), 621-635, 2013
12013
Bio/Recursion: Exploring CS and Bioinformatics in R
ST O'Neil
Shawn Thomas O'Neil, 2018
2018
Expert Advice and the Newsvendor Problem: Applying Expert Advice Algorithms to the Multi-period Newsvendor Problem
ST O'Neil
University of Notre Dame, 2009
2009
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Articles 1–16