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Yvan Saeys
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A review of feature selection techniques in bioinformatics
Y Saeys, I Inza, P Larranaga
bioinformatics 23 (19), 2507-2517, 2007
54082007
Wisdom of crowds for robust gene network inference
D Marbach, JC Costello, R Küffner, NM Vega, RJ Prill, DM Camacho, ...
Nature methods 9 (8), 796-804, 2012
15452012
FlowSOM: Using self‐organizing maps for visualization and interpretation of cytometry data
S Van Gassen, B Callebaut, MJ Van Helden, BN Lambrecht, P Demeester, ...
Cytometry Part A 87 (7), 636-645, 2015
9772015
Genome analysis of the smallest free-living eukaryote Ostreococcus tauri unveils many unique features
E Derelle, C Ferraz, S Rombauts, P Rouzé, AZ Worden, S Robbens, ...
Proceedings of the National Academy of Sciences 103 (31), 11647-11652, 2006
9042006
A comparison of single-cell trajectory inference methods
W Saelens, R Cannoodt, H Todorov, Y Saeys
Nature biotechnology 37 (5), 547-554, 2019
7702019
Robust feature selection using ensemble feature selection techniques
Y Saeys, T Abeel, YV Peer
Joint European conference on machine learning and knowledge discovery in …, 2008
7342008
Robust biomarker identification for cancer diagnosis with ensemble feature selection methods
T Abeel, T Helleputte, Y Van de Peer, P Dupont, Y Saeys
Bioinformatics 26 (3), 392-398, 2010
6552010
Unsupervised high-dimensional analysis aligns dendritic cells across tissues and species
M Guilliams, CA Dutertre, CL Scott, N McGovern, D Sichien, S Chakarov, ...
Immunity 45 (3), 669-684, 2016
6522016
The function of Fcγ receptors in dendritic cells and macrophages
M Guilliams, P Bruhns, Y Saeys, H Hammad, BN Lambrecht
Nature Reviews Immunology 14 (2), 94-108, 2014
6082014
Bone marrow-derived monocytes give rise to self-renewing and fully differentiated Kupffer cells
CL Scott, F Zheng, P De Baetselier, L Martens, Y Saeys, S De Prijck, ...
Nature communications 7 (1), 1-10, 2016
5872016
Yolk sac macrophages, fetal liver, and adult monocytes can colonize an empty niche and develop into functional tissue-resident macrophages
L van de Laar, W Saelens, S De Prijck, L Martens, CL Scott, ...
Immunity 44 (4), 755-768, 2016
4792016
NicheNet: modeling intercellular communication by linking ligands to target genes
R Browaeys, W Saelens, Y Saeys
Nature methods 17 (2), 159-162, 2020
4132020
A single-cell atlas of mouse brain macrophages reveals unique transcriptional identities shaped by ontogeny and tissue environment
H Van Hove, L Martens, I Scheyltjens, K De Vlaminck, AR Pombo Antunes, ...
Nature neuroscience 22 (6), 1021-1035, 2019
4042019
Computational flow cytometry: helping to make sense of high-dimensional immunology data
Y Saeys, S Van Gassen, BN Lambrecht
Nature Reviews Immunology 16 (7), 449-462, 2016
3802016
A cell atlas of human thymic development defines T cell repertoire formation
JE Park, RA Botting, C Domínguez Conde, DM Popescu, M Lavaert, ...
Science 367 (6480), eaay3224, 2020
2792020
Stellate cells, hepatocytes, and endothelial cells imprint the Kupffer cell identity on monocytes colonizing the liver macrophage niche
J Bonnardel, W T’Jonck, D Gaublomme, R Browaeys, CL Scott, L Martens, ...
Immunity 51 (4), 638-654. e9, 2019
2562019
IRF8 transcription factor controls survival and function of terminally differentiated conventional and plasmacytoid dendritic cells, respectively
D Sichien, CL Scott, L Martens, M Vanderkerken, S Van Gassen, ...
Immunity 45 (3), 626-640, 2016
2502016
Generic eukaryotic core promoter prediction using structural features of DNA
T Abeel, Y Saeys, E Bonnet, P Rouzé, Y Van de Peer
Genome research 18 (2), 310-323, 2008
2262008
The unfolded-protein-response sensor IRE-1α regulates the function of CD8α+ dendritic cells
F Osorio, SJ Tavernier, E Hoffmann, Y Saeys, L Martens, J Vetters, ...
Nature immunology 15 (3), 248-257, 2014
2192014
A scalable SCENIC workflow for single-cell gene regulatory network analysis
B Van de Sande, C Flerin, K Davie, M De Waegeneer, G Hulselmans, ...
Nature Protocols 15 (7), 2247-2276, 2020
2032020
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