| Finished Genome of the Fungal Wheat Pathogen Mycosphaerella graminicola Reveals Dispensome Structure, Chromosome Plasticity, and Stealth Pathogenesis SB Goodwin, S Ben M'Barek, B Dhillon, AHJ Wittenberg, CF Crane, ... PLoS genetics 7 (6), e1002070, 2011 | 553 | 2011 |
| The quest for orthologs: finding the corresponding gene across genomes A Kuzniar, RCHJ van Ham, S Pongor, JAM Leunissen Trends in Genetics 24 (11), 539-551, 2008 | 330 | 2008 |
| Interoperability and FAIRness through a novel combination of Web technologies MD Wilkinson, R Verborgh, LOB da Silva Santos, T Clark, MA Swertz, ... PeerJ Computer Science 7, doi:10.7717/peerj-cs.110, 2017 | 98 | 2017 |
| Selectome update: quality control and computational improvements to a database of positive selection S Moretti, B Laurenczy, WH Gharib, B Castella, A Kuzniar, H Schabauer, ... Nucleic acids research 42 (D1), D917-D921, 2014 | 75 | 2014 |
| FAIR data points supporting big data interoperability LOB da Silva Santos, MD Wilkinson, A Kuzniar, R Kaliyaperumal, ... Enterprise Interoperability in the Digitized and Networked Factory of the …, 2016 | 38 | 2016 |
| Benchmarking protein classification algorithms via supervised cross-validation A Kertész-Farkas, S Dhir, P Sonego, M Pacurar, S Netoteia, H Nijveen, ... Journal of biochemical and biophysical methods 70 (6), 1215-1223, 2008 | 27 | 2008 |
| ProGMap: an integrated annotation resource for protein orthology A Kuzniar, K Lin, Y He, H Nijveen, S Pongor, JAM Leunissen Nucleic acids research 37 (suppl_2), W428-W434, 2009 | 21 | 2009 |
| Semi-quantitative proteomics of mammalian cells upon short-term exposure to non-ionizing electromagnetic fields A Kuzniar, C Laffeber, B Eppink, K Bezstarosti, D Dekkers, H Woelders, ... PLoS ONE 12 (2), doi:10.1371/journal.pone.0170762, 2017 | 20 | 2017 |
| sv-callers: a highly portable parallel workflow for structural variant detection in whole-genome sequence data A Kuzniar, J Maassen, S Verhoeven, L Santuari, C Shneider, ... PeerJ Bioinformatics and Genomics 18, e8214, doi:10.7717/peerj.821, 2020 | 16 | 2020 |
| Evidence for RNA recombination between distinct isolates of Pepino mosaic virus B Hasiów-Jaroszewska*, A Kuzniar*, SA Peters, JAM Leunissen, ... Acta Biochimica Polonica 57 (3), 385-388, 2010 | 15 | 2010 |
| QTLTableMiner++: semantic mining of QTL tables in scientific articles G Singh, A Kuzniar, EM van Mulligen, A Gavai, CW Bachem, RGF Visser, ... BMC bioinformatics 19 (1), 1-11, 2018 | 13 | 2018 |
| fMLC: Fast Multi-Level Clustering and Visualization of Large Molecular Datasets D Vu, S Georgievska, S Szoke, A Kuzniar, V Robert Bioinformatics, doi:10.1093/bioinformatics/btx810, 2017 | 11 | 2017 |
| PIQMIe: a web server for semi-quantitative proteomics data management and analysis A Kuzniar, R Kanaar Nucleic acids research 42 (W1), W100-W106, 2014 | 8 | 2014 |
| gcodeml: A Grid-enabled Tool for Detecting Positive Selection in Biological Evolution S Moretti, R Murri, S Maffioletti, A Kuzniar, B Castella, N Salamin, ... Healthgrid Applications and Technologies Meet Science Gateways for Life …, 2012 | 8 | 2012 |
| Linked data platform for solanaceae species G Singh*, A Kuzniar*, M Brouwer, C Martinez-Ortiz, CWB Bachem, ... Applied Sciences 10 (19), 6813, 2020 | 6 | 2020 |
| Multi-netclust: an efficient tool for finding connected clusters in multi-parametric networks A Kuzniar*, S Dhir*, H Nijveen, S Pongor, JAM Leunissen Bioinformatics 26 (19), 2482-2483, 2010 | 3 | 2010 |
| Knowledge extraction from archives of natural history collections L Stork Leiden University, 2021 | 2 | 2021 |
| A portable and scalable workflow for detecting structural variants in whole-genome sequencing data A Kuzniar, J Maassen, S Verhoeven, L Santuari, C Shneider, ... 2018 IEEE 14th International Conference on e-Science (e-Science), 303-304, 2018 | 1 | 2018 |
| Graph-based methods for large-scale protein classification and orthology inference A Kuzniar Wageningen University, 2009 | 1 | 2009 |
| Linked Data Platform for Plant Breeding and Genomics A Kuzniar, G Singh, C Martinez-Ortiz, RGF Visser, R Finkers Scientific Symposium FAIR Data Sciences for Green Life Sciences, 1-1, 2018 | | 2018 |
