Vineeth Surendranath
Vineeth Surendranath
Senior Scientist, DKMS Life Science Lab
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Development of human protein reference database as an initial platform for approaching systems biology in humans
S Peri, JD Navarro, R Amanchy, TZ Kristiansen, CK Jonnalagadda, ...
Genome research 13 (10), 2363-2371, 2003
11572003
Global analysis of the yeast lipidome by quantitative shotgun mass spectrometry
CS Ejsing, JL Sampaio, V Surendranath, E Duchoslav, K Ekroos, ...
Proceedings of the National Academy of Sciences 106 (7), 2136-2141, 2009
7152009
Human protein reference database as a discovery resource for proteomics
S Peri, JD Navarro, TZ Kristiansen, R Amanchy, V Surendranath, ...
Nucleic acids research 32 (suppl 1), D497-D501, 2004
6032004
Genome-scale RNAi profiling of cell division in human tissue culture cells
R Kittler, L Pelletier, AK Heninger, M Slabicki, M Theis, L Miroslaw, I Poser, ...
Nature cell biology 9 (12), 1401-1412, 2007
3052007
Genome-wide resources of endoribonuclease-prepared short interfering RNAs for specific loss-of-function studies
R Kittler, V Surendranath, AK Heninger, M Slabicki, M Theis, G Putz, ...
Nature methods 4 (4), 337-344, 2007
1972007
Top-down lipidomic screens by multivariate analysis of high-resolution survey mass spectra
D Schwudke, JT Hannich, V Surendranath, V Grimard, T Moehring, ...
Analytical chemistry 79 (11), 4083-4093, 2007
1682007
Sequence similarity‐driven proteomics in organisms with unknown genomes by LC‐MS/MS and automated de novo sequencing
P Waridel, A Frank, H Thomas, V Surendranath, S Sunyaev, P Pevzner, ...
Proteomics 7 (14), 2318-2329, 2007
1072007
Systematic imaging reveals features and changing localization of mRNAs in Drosophila development
H Jambor, V Surendranath, AT Kalinka, P Mejstrik, S Saalfeld, ...
eLife 4, e05003, 2015
832015
Directed evolution of a recombinase that excises the provirus of most HIV-1 primary isolates with high specificity
J Karpinski, I Hauber, J Chemnitz, C Schäfer, M Paszkowski-Rogacz, ...
Nature biotechnology 34 (4), 401, 2016
742016
Combined RNAi and localization for functionally dissecting long noncoding RNAs
D Chakraborty, D Kappei, M Theis, A Nitzsche, L Ding, ...
Nature methods 9 (4), 360-362, 2012
642012
Rapid validation of protein identifications with the borderline statistical confidence via de novo sequencing and MS BLAST searches
N Wielsch, H Thomas, V Surendranath, P Waridel, A Frank, P Pevzner, ...
Journal of proteome research 5 (9), 2448-2456, 2006
482006
Separating the wheat from the chaff: unbiased filtering of background tandem mass spectra improves protein identification
M Junqueira, V Spirin, T Santana Balbuena, P Waridel, V Surendranath, ...
Journal of proteome research 7 (8), 3382-3395, 2008
472008
Revisiting the yeast PPR proteins—application of an iterative hidden Markov model algorithm reveals new members of the rapidly evolving family
KA Lipinski, O Puchta, V Surendranath, M Kudla, P Golik
Molecular Biology and Evolution 28 (10), 2935-2948, 2011
462011
Vika/vox, a novel efficient and specific Cre/loxP-like site-specific recombination system
M Karimova, J Abi-Ghanem, N Berger, V Surendranath, MT Pisabarro, ...
Nucleic acids research 41 (2), e37-e37, 2013
352013
Dual redundant sequencing strategy: Full‐length gene characterisation of 1056 novel and confirmatory HLA alleles
V Albrecht, C Zweiniger, V Surendranath, K Lang, G Schöfl, A Dahl, ...
Hla 90 (2), 79-87, 2017
342017
Designing efficient and specific endoribonuclease-prepared siRNAs
V Surendranath, M Theis, BH Habermann, F Buchholz
siRNA Design, 193-204, 2013
202013
SeLOX—a locus of recombination site search tool for the detection and directed evolution of site-specific recombination systems
V Surendranath, J Chusainow, J Hauber, F Buchholz, BH Habermann
Nucleic acids research 38 (suppl 2), W293-W298, 2010
162010
Full-Length HLA Class I Genotyping with the MinION Nanopore Sequencer
K Lang, V Surendranath, P Quenzel, G Schöfl, AH Schmidt, V Lange
HLA Typing, 155-162, 2018
132018
ProFAT: a web-based tool for the functional annotation of protein sequences
CR Bradshaw, V Surendranath, B Habermann
BMC bioinformatics 7 (1), 466, 2006
112006
BioBuilder as a database development and functional annotation platform for proteins
JD Navarro, N Talreja, S Peri, BM Vrushabendra, BP Rashmi, N Padma, ...
BMC bioinformatics 5 (1), 43, 2004
112004
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