CABS-dock web server for the flexible docking of peptides to proteins without prior knowledge of the binding site M Kurcinski, M Jamroz, M Blaszczyk, A Kolinski, S Kmiecik Nucleic acids research 43 (W1), W419-W424, 2015 | 382 | 2015 |
AGGRESCAN3D (A3D): server for prediction of aggregation properties of protein structures R Zambrano, M Jamroz, A Szczasiuk, J Pujols, S Kmiecik, S Ventura Nucleic acids research 43 (W1), W306-W313, 2015 | 235 | 2015 |
KnotProt: a database of proteins with knots and slipknots M Jamroz, W Niemyska, EJ Rawdon, A Stasiak, KC Millett, P Sułkowski, ... Nucleic acids research 43 (D1), D306-D314, 2015 | 215 | 2015 |
CABS-flex: server for fast simulation of protein structure fluctuations M Jamroz, A Kolinski, S Kmiecik Nucleic acids research 41 (W1), W427-W431, 2013 | 168 | 2013 |
CABS-fold: server for the de novo and consensus-based prediction of protein structure M Blaszczyk, M Jamroz, S Kmiecik, A Kolinski Nucleic acids research 41 (W1), W406-W411, 2013 | 105 | 2013 |
Consistent view of protein fluctuations from all-atom molecular dynamics and coarse-grained dynamics with knowledge-based force-field M Jamroz, M Orozco, A Kolinski, S Kmiecik Journal of chemical theory and computation 9 (1), 119-125, 2013 | 92 | 2013 |
CABS-flex predictions of protein flexibility compared with NMR ensembles M Jamroz, A Kolinski, S Kmiecik Bioinformatics 30 (15), 2150-2154, 2014 | 90 | 2014 |
Modeling of loops in proteins: a multi-method approach M Jamroz, A Kolinski BMC structural biology 10, 1-9, 2010 | 57 | 2010 |
Combining structural aggregation propensity and stability predictions to redesign protein solubility M Gil-Garcia, M Bano-Polo, N Varejao, M Jamroz, A Kuriata, ... Molecular pharmaceutics 15 (9), 3846-3859, 2018 | 48 | 2018 |
ClusCo: clustering and comparison of protein models M Jamroz, A Kolinski Bmc Bioinformatics 14, 1-6, 2013 | 44 | 2013 |
Structure prediction of the second extracellular loop in G-protein-coupled receptors S Kmiecik, M Jamroz, M Kolinski Biophysical journal 106 (11), 2408-2416, 2014 | 38 | 2014 |
Structural features that predict real‐value fluctuations of globular proteins M Jamroz, A Kolinski, D Kihara Proteins: Structure, Function, and Bioinformatics 80 (5), 1425-1435, 2012 | 22 | 2012 |
Multiscale approach to protein folding dynamics S Kmiecik, M Jamroz, A Kolinski Multiscale Approaches to Protein Modeling: Structure Prediction, Dynamics …, 2011 | 19 | 2011 |
Coarse-grained simulations of membrane insertion and folding of small helical proteins using the CABS model W Pulawski, M Jamroz, M Kolinski, A Kolinski, S Kmiecik Journal of Chemical Information and Modeling 56 (11), 2207-2215, 2016 | 17 | 2016 |
Protocols for efficient simulations of long-time protein dynamics using coarse-grained CABS model M Jamroz, A Kolinski, S Kmiecik Protein Structure Prediction, 235-250, 2014 | 15 | 2014 |
Ensemble-based evaluation for protein structure models M Jamroz, A Kolinski, D Kihara Bioinformatics 32 (12), i314-i321, 2016 | 10 | 2016 |
Predicting real-valued protein residue fluctuation using FlexPred L Peterson, M Jamroz, A Kolinski, D Kihara Prediction of Protein Secondary Structure, 175-186, 2017 | 6 | 2017 |
Multiscale Approaches to Protein Modeling S Kmiecik, M Jamroz, A Kolinski Springer, 2011 | 5 | 2011 |
Multiscale Protein and Peptide Docking M Kurcinski, M Jamroz, A Kolinski Multiscale Approaches to Protein Modeling: Structure Prediction, Dynamics …, 2011 | 2 | 2011 |
Web server tools for modeling of protein structure, flexibility, aggregation properties and protein-peptide interactions M Blaszczyk, M Jamroz, M Kurcinski, A Szczasiuk, A Kolinski, S Kmiecik PROTEIN SCIENCE 24, 247-248, 2015 | | 2015 |