Follow
Marzia Di Filippo
Marzia Di Filippo
Verified email at unimib.it
Title
Cited by
Cited by
Year
Integration of single-cell RNA-seq data into population models to characterize cancer metabolism
C Damiani, D Maspero, M Di Filippo, R Colombo, D Pescini, A Graudenzi, ...
PLoS computational biology 15 (2), e1006733, 2019
452019
Zooming-in on cancer metabolic rewiring with tissue specific constraint-based models
M Di Filippo, R Colombo, C Damiani, D Pescini, D Gaglio, M Vanoni, ...
Computational biology and chemistry 62, 60-69, 2016
362016
popFBA: tackling intratumour heterogeneity with Flux Balance Analysis
C Damiani, M Di Filippo, D Pescini, D Maspero, R Colombo, G Mauri
Bioinformatics 33 (14), i311-i318, 2017
242017
Integration of transcriptomic data and metabolic networks in cancer samples reveals highly significant prognostic power
A Graudenzi, D Maspero, M Di Filippo, M Gnugnoli, C Isella, G Mauri, ...
Journal of biomedical informatics 87, 37-49, 2018
192018
MaREA4Galaxy: Metabolic reaction enrichment analysis and visualization of RNA-seq data within Galaxy
C Damiani, L Rovida, D Maspero, I Sala, L Rosato, M Di Filippo, D Pescini, ...
Computational and structural biotechnology journal 18, 993-999, 2020
62020
MaREA4Galaxy: Metabolic reaction enrichment analysis and visualization of RNA-seq data within Galaxy
C Damiani, L Rovida, D Maspero, I Sala, L Rosato, M Di Filippo, D Pescini, ...
Computational and structural biotechnology journal 18, 993-999, 2020
62020
Single-cell digital twins for cancer preclinical investigation
MD Filippo, C Damiani, M Vanoni, D Maspero, G Mauri, L Alberghina, ...
Metabolic Flux Analysis in Eukaryotic Cells, 331-343, 2020
52020
Linking alterations in metabolic fluxes with shifts in metabolite levels by means of kinetic modeling
C Damiani, R Colombo, MD Filippo, D Pescini, G Mauri
Italian Workshop on Artificial Life and Evolutionary Computation, 138-148, 2016
52016
Constraint-based modeling and simulation of cell populations
MD Filippo, C Damiani, R Colombo, D Pescini, G Mauri
Italian Workshop on Artificial Life and Evolutionary Computation, 126-137, 2016
52016
INTEGRATE: Model-based multi-omics data integration to characterize multi-level metabolic regulation
M Di Filippo, D Pescini, BG Galuzzi, M Bonanomi, D Gaglio, E Mangano, ...
PLoS computational biology 18 (2), e1009337, 2022
32022
Integration of single-cell RNA-seq data into metabolic models to characterize tumour cell populations
C Damiani, D Maspero, M Di Filippo, R Colombo, D Pescini, A Graudenzi, ...
bioRxiv, 256644, 2018
32018
The influence of nutrients diffusion on a metabolism-driven model of a multi-cellular system
D Maspero, C Damiani, M Antoniotti, A Graudenzi, M Di Filippo, M Vanoni, ...
Fundamenta Informaticae 171 (1-4), 279-295, 2020
22020
Integration of Single-Cell RNA-Sequencing Data into Flux Balance Cellular Automata
D Maspero, M Di Filippo, F Angaroni, D Pescini, G Mauri, M Vanoni, ...
International Meeting on Computational Intelligence Methods forá…, 2019
12019
Genome-scale metabolic reconstruction of the stress-tolerant hybrid yeast Zygosaccharomyces parabailii
M Di Filippo, RA Ortiz-Merino, C Damiani, G Frascotti, D Porro, KH Wolfe, ...
bioRxiv, 373621, 2018
12018
MaREA: Metabolic feature extraction, enrichment and visualization of RNAseq data
A Graudenzi, D Maspero, C Isella, M Di Filippo, G Mauri, E Medico, ...
bioRxiv, 248724, 2018
12018
GPRuler: Metabolic gene-protein-reaction rules automatic reconstruction
M Di Filippo, C Damiani, D Pescini
PLoS computational biology 17 (11), e1009550, 2021
2021
NEW CONSTRAINT-BASED APPROACHES TO TACKLE THE MULTIPLE SIDES OF CELL METABOLIC PLASTICITY AND HETEROGENEITY
M DI FILIPPO
UniversitÓ degli Studi di Milano-Bicocca, 2019
2019
Metabolic enrichment through functional gene rules
D Maspero, C Isella, M Di Filippo, A Graudenzi, SE Bellomo, M Antoniotti, ...
arXiv preprint arXiv:1710.06017, 2017
2017
Mobile app to perform anonymized longitudinal studies in the context of COVID-19 adverse drug reaction monitoring, leveraging the citizenship engagement
M Di Filippo, A Avellone, M Belingheri, ME Paladino, MA Riva, A Zambon, ...
JMIR human factors, 0
Applying data mining tools to infer species community structures from omics data
G Agostinetto, M Di Filippo, A Sandionigi, D Pescini, M Casiraghi
The system can't perform the operation now. Try again later.
Articles 1–20