Justin Zook
Title
Cited by
Cited by
Year
Integrating human sequence data sets provides a resource of benchmark SNP and indel genotype calls
JM Zook, B Chapman, J Wang, D Mittelman, O Hofmann, W Hide, M Salit
Nature biotechnology 32 (3), 246-251, 2014
6832014
Assuring the quality of next-generation sequencing in clinical laboratory practice
AS Gargis, L Kalman, MW Berry, DP Bick, DP Dimmock, T Hambuch, F Lu, ...
Nature biotechnology 30 (11), 1033-1036, 2012
4482012
Extensive sequencing of seven human genomes to characterize benchmark reference materials
JM Zook, D Catoe, J McDaniel, L Vang, N Spies, A Sidow, Z Weng, Y Liu, ...
Scientific data 3 (1), 1-26, 2016
4002016
Accurate circular consensus long-read sequencing improves variant detection and assembly of a human genome
AM Wenger, P Peluso, WJ Rowell, PC Chang, RJ Hall, GT Concepcion, ...
Nature biotechnology 37 (10), 1155-1162, 2019
3902019
Stable nanoparticle aggregates/agglomerates of different sizes and the effect of their size on hemolytic cytotoxicity
JM Zook, RI MacCuspie, LE Locascio, MD Halter, JT Elliott
Nanotoxicology 5 (4), 517-530, 2011
2372011
Measuring silver nanoparticle dissolution in complex biological and environmental matrices using UV–visible absorbance
JM Zook, SE Long, D Cleveland, CLA Geronimo, RI MacCuspie
Analytical and bioanalytical chemistry 401 (6), 1993-2002, 2011
2132011
An open resource for accurately benchmarking small variant and reference calls
JM Zook, J McDaniel, ND Olson, J Wagner, H Parikh, H Heaton, SA Irvine, ...
Nature biotechnology 37 (5), 561-566, 2019
163*2019
Best practices for evaluating single nucleotide variant calling methods for microbial genomics
ND Olson, SP Lund, RE Colman, JT Foster, JW Sahl, JM Schupp, P Keim, ...
Frontiers in genetics 6, 235, 2015
1452015
Good laboratory practice for clinical next-generation sequencing informatics pipelines
AS Gargis, L Kalman, DP Bick, C Da Silva, DP Dimmock, BH Funke, ...
Nature biotechnology 33 (7), 689-693, 2015
1342015
Nanopore sequencing and the Shasta toolkit enable efficient de novo assembly of eleven human genomes
K Shafin, T Pesout, R Lorig-Roach, M Haukness, HE Olsen, C Bosworth, ...
Nature biotechnology 38 (9), 1044-1053, 2020
133*2020
Best practices for benchmarking germline small-variant calls in human genomes
P Krusche, L Trigg, PC Boutros, CE Mason, M Francisco, BL Moore, ...
Nature biotechnology 37 (5), 555-560, 2019
1252019
A robust benchmark for detection of germline large deletions and insertions
JM Zook, NF Hansen, ND Olson, L Chapman, JC Mullikin, C Xiao, ...
Nature biotechnology 38 (11), 1347-1355, 2020
111*2020
Effects of temperature, acyl chain length, and flow-rate ratio on liposome formation and size in a microfluidic hydrodynamic focusing device
JM Zook, WN Vreeland
Soft matter 6 (6), 1352-1360, 2010
1072010
Medical implications of technical accuracy in genome sequencing
RL Goldfeder, JR Priest, JM Zook, ME Grove, D Waggott, MT Wheeler, ...
Genome medicine 8 (1), 1-12, 2016
1032016
Measuring agglomerate size distribution and dependence of localized surface plasmon resonance absorbance on gold nanoparticle agglomerate size using analytical ultracentrifugation
JM Zook, V Rastogi, RI MacCuspie, AM Keene, J Fagan
ACS nano 5 (10), 8070-8079, 2011
1022011
Statistical analysis of fractal-based brain tumor detection algorithms
JM Zook, KM Iftekharuddin
Magnetic resonance imaging 23 (5), 671-678, 2005
1012005
An analytical framework for optimizing variant discovery from personal genomes
G Highnam, JJ Wang, D Kusler, J Zook, V Vijayan, N Leibovich, ...
Nature communications 6 (1), 1-6, 2015
992015
Comparing variant call files for performance benchmarking of next-generation sequencing variant calling pipelines
JG Cleary, R Braithwaite, K Gaastra, BS Hilbush, S Inglis, SA Irvine, ...
BioRxiv, 023754, 2015
882015
Genome-wide reconstruction of complex structural variants using read clouds
N Spies, Z Weng, A Bishara, J McDaniel, D Catoe, JM Zook, M Salit, ...
Nature methods 14 (9), 915-920, 2017
822017
Synthetic spike-in standards improve run-specific systematic error analysis for DNA and RNA sequencing
JM Zook, D Samarov, J McDaniel, SK Sen, M Salit
Public Library of Science 7 (7), e41356, 2012
582012
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Articles 1–20