Georgios A. Pavlopoulos
Georgios A. Pavlopoulos
Research Director (Bioinformatics Professor)@BSRC Fleming // Managing Director BioInnovation Greece
Verified email at - Homepage
Cited by
Cited by
Uncovering Earth's Virome
D Paez-Espino, EA Eloe-Fadrosh, GA Pavlopoulos, AD Thomas, ...
Nature, 2016
Using graph theory to analyze biological networks
GA Pavlopoulos, M Secrier, CN Moschopoulos, TG Soldatos, S Kossida, ...
BioData mining 4, 1-27, 2011
Protein structure determination using metagenome sequence data
DB Sergey Ovchinnikov, Hahnbeom Park, Neha Varghese, Po-Ssu Huang, Georgios ...
Science 355 (6322), 294-298, 2017
Cultivation and sequencing of rumen microbiome members from the Hungate1000 Collection
R Seshadri, SC Leahy, GT Attwood, KH Teh, SC Lambie, AL Cookson, ...
Nature biotechnology 36 (4), 359-367, 2018
Metagenomics: tools and insights for analyzing next-generation sequencing data derived from biodiversity studies
A Oulas, C Pavloudi, P Polymenakou, GA Pavlopoulos, N Papanikolaou, ...
Bioinformatics and biology insights 9, BBI. S12462, 2015
A survey of visualization tools for biological network analysis
GA Pavlopoulos, AL Wegener, R Schneider
Biodata mining 1, 12, 2008
1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life
S Mukherjee, R Seshadri, NJ Varghese, EA Eloe-Fadrosh, ...
Nature biotechnology 35 (7), 676, 2017
A guide to conquer the biological network era using graph theory
M Koutrouli, E Karatzas, D Paez-Espino, GA Pavlopoulos
Frontiers in bioengineering and biotechnology 8, 34, 2020
IMG/VR: A database of cultured and uncultured DNA Viruses and Retroviruses
D Paez-Espino, IMA Chen A, K Palaniappan, A Ratner, K Chu, E Szeto, ...
Nucleic Acids Research, 2016
Large-scale analyses of human microbiomes reveal thousands of small, novel genes
H Sberro, BJ Fremin, S Zlitni, F Edfors, N Greenfield, MP Snyder, ...
Cell 178 (5), 1245-1259. e14, 2019
Bipartite graphs in systems biology and medicine: a survey of methods and applications
GA Pavlopoulos, PI Kontou, A Pavlopoulou, C Bouyioukos, E Markou, ...
GigaScience 7 (4), giy014, 2018
HipMCL: a high-performance parallel implementation of the Markov clustering algorithm for large-scale networks
A Azad, GA Pavlopoulos, CA Ouzounis, NC Kyrpides, A BuluÁ
Nucleic acids research 46 (6), e33-e33, 2018
Arena3D: visualization of biological networks in 3D
GA Pavlopoulos, S O'Donoghue, V Satagopam, T Soldatos, E Pafilis, ...
BMC systems biology 2 (1), 104, 2008
Non-targeted virus sequence discovery pipeline and virus clustering for metagenomic data
D Paez-Espino, GA Pavlopoulos, NN Ivanova, K NC
Nature Protocols, 1673–1682, 2017
Visualizing genome and systems biology: technologies, tools, implementation techniques and trends, past, present and future
GA Pavlopoulos, D Malliarakis, N Papanikolaou, T Theodosiou, A Enright, ...
GigaScience 4 (38), 2015
A reference guide for tree analysis and visualization
GA Pavlopoulos, TG Soldatos, A Barbosa-Silva, R Schneider
BioData mining 3, 1-24, 2010
Protein–protein interaction predictions using text mining methods
N Papanikolaou, GA Pavlopoulos, T Theodosiou, I Iliopoulos
Methods 74, 47-53, 2015
Unraveling genomic variation from next generation sequencing data
GA Pavlopoulos, A Oulas, E Iacucci, A Sifrim, Y Moreau, R Schneider, ...
BioData Mining 6 (13), 2013
Global BioID-based SARS-CoV-2 proteins proximal interactome unveils novel ties between viral polypeptides and host factors involved in multiple COVID19-associated mechanisms
EMN Laurent, Y Sofianatos, A Komarova, JP Gimeno, PS Tehrani, DK Kim, ...
BioRxiv, 2020.08. 28.272955, 2020
Medusa: A tool for exploring and clustering biological networks
GA Pavlopoulos, S Hooper, A Sifrim, R Schneider, J Aerts
BMC Research Notes 4 (1), 384, 2011
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