| Uncovering Earth's Virome D Paez-Espino, EA Eloe-Fadrosh, GA Pavlopoulos, AD Thomas, ... Nature, 2016 | 1063 | 2016 |
| Using graph theory to analyze biological networks GA Pavlopoulos, M Secrier, CN Moschopoulos, TG Soldatos, S Kossida, ... BioData mining 4, 1-27, 2011 | 942 | 2011 |
| Protein structure determination using metagenome sequence data DB Sergey Ovchinnikov, Hahnbeom Park, Neha Varghese, Po-Ssu Huang, Georgios ... Science 355 (6322), 294-298, 2017 | 546 | 2017 |
| Cultivation and sequencing of rumen microbiome members from the Hungate1000 Collection R Seshadri, SC Leahy, GT Attwood, KH Teh, SC Lambie, AL Cookson, ... Nature biotechnology 36 (4), 359-367, 2018 | 524 | 2018 |
| Metagenomics: tools and insights for analyzing next-generation sequencing data derived from biodiversity studies A Oulas, C Pavloudi, P Polymenakou, GA Pavlopoulos, N Papanikolaou, ... Bioinformatics and biology insights 9, BBI. S12462, 2015 | 497 | 2015 |
| A guide to conquer the biological network era using graph theory M Koutrouli, E Karatzas, D Paez-Espino, GA Pavlopoulos Frontiers in bioengineering and biotechnology 8, 34, 2020 | 267 | 2020 |
| 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life S Mukherjee, R Seshadri, NJ Varghese, EA Eloe-Fadrosh, ... Nature biotechnology 35 (7), 676, 2017 | 265 | 2017 |
| A survey of visualization tools for biological network analysis GA Pavlopoulos, AL Wegener, R Schneider Biodata mining 1, 12, 2008 | 262 | 2008 |
| Large-scale analyses of human microbiomes reveal thousands of small, novel genes H Sberro, BJ Fremin, S Zlitni, F Edfors, N Greenfield, MP Snyder, ... Cell 178 (5), 1245-1259. e14, 2019 | 223 | 2019 |
| IMG/VR: A database of cultured and uncultured DNA Viruses and Retroviruses D Paez-Espino, IMA Chen A, K Palaniappan, A Ratner, K Chu, E Szeto, ... Nucleic Acids Research, 2016 | 221 | 2016 |
| Bipartite graphs in systems biology and medicine: a survey of methods and applications GA Pavlopoulos, PI Kontou, A Pavlopoulou, C Bouyioukos, E Markou, ... GigaScience 7 (4), giy014, 2018 | 207 | 2018 |
| HipMCL: a high-performance parallel implementation of the Markov clustering algorithm for large-scale networks A Azad, GA Pavlopoulos, CA Ouzounis, NC Kyrpides, A Buluç Nucleic acids research 46 (6), e33-e33, 2018 | 166 | 2018 |
| Arena3D: visualization of biological networks in 3D GA Pavlopoulos, S O'Donoghue, V Satagopam, T Soldatos, E Pafilis, ... BMC systems biology 2 (1), 104, 2008 | 139 | 2008 |
| Non-targeted virus sequence discovery pipeline and virus clustering for metagenomic data D Paez-Espino, GA Pavlopoulos, NN Ivanova, K NC Nature Protocols, 1673–1682, 2017 | 130 | 2017 |
| Visualizing genome and systems biology: technologies, tools, implementation techniques and trends, past, present and future GA Pavlopoulos, D Malliarakis, N Papanikolaou, T Theodosiou, A Enright, ... GigaScience 4 (38), 2015 | 125 | 2015 |
| A reference guide for tree analysis and visualization GA Pavlopoulos, TG Soldatos, A Barbosa-Silva, R Schneider BioData mining 3, 1-24, 2010 | 122 | 2010 |
| Protein–protein interaction predictions using text mining methods N Papanikolaou, GA Pavlopoulos, T Theodosiou, I Iliopoulos Methods 74, 47-53, 2015 | 107 | 2015 |
| Unraveling genomic variation from next generation sequencing data GA Pavlopoulos, A Oulas, E Iacucci, A Sifrim, Y Moreau, R Schneider, ... BioData Mining 6 (13), 2013 | 88 | 2013 |
| Global BioID-based SARS-CoV-2 proteins proximal interactome unveils novel ties between viral polypeptides and host factors involved in multiple COVID19-associated mechanisms EMN Laurent, Y Sofianatos, A Komarova, JP Gimeno, PS Tehrani, DK Kim, ... BioRxiv, 2020.08. 28.272955, 2020 | 73 | 2020 |
| Unraveling the functional dark matter through global metagenomics GA Pavlopoulos, FA Baltoumas, S Liu, O Selvitopi, AP Camargo, ... Nature 622 (7983), 594-602, 2023 | 71 | 2023 |
Reinhard SchneiderProf. Bioinformatics, University of Luxembourg, Head of Bioinformatics Core Facility, LuxembourgVerified email at uni.lu
