| The khmer software package: enabling efficient nucleotide sequence analysis MR Crusoe, HF Alameldin, S Awad, E Boucher, A Caldwell, R Cartwright, ... F1000Research 4, 2015 | 372* | 2015 |
| sourmash: a library for MinHash sketching of DNA C Brown, L Irber Journal of Open Source Software 1 (5), 27, 2016 | 246 | 2016 |
| Critical Assessment of Metagenome Interpretation: the second round of challenges F Meyer, A Fritz, ZL Deng, D Koslicki, TR Lesker, A Gurevich, G Robertson, ... Nature methods 19 (4), 429-440, 2022 | 189 | 2022 |
| Large-scale sequence comparisons with sourmash NT Pierce, L Irber, T Reiter, P Brooks, CT Brown F1000Research 8, 2019 | 142* | 2019 |
| Climate simulation and change in the Brazilian climate model P Nobre, LSP Siqueira, RAF de Almeida, M Malagutti, E Giarolla, ... Journal of Climate 26 (17), 6716-6732, 2013 | 83 | 2013 |
| Haplotype-phased synthetic long reads from short-read sequencing JA Stapleton, J Kim, JP Hamilton, M Wu, LC Irber, R Maddamsetti, ... PloS one 11 (1), e0147229, 2016 | 38 | 2016 |
| Lightweight compositional analysis of metagenomes with FracMinHash and minimum metagenome covers L Irber, PT Brooks, T Reiter, NT Pierce-Ward, MR Hera, D Koslicki, ... bioRxiv, 2022.01. 11.475838, 2022 | 36 | 2022 |
| Streamlining data-intensive biology with workflow systems T Reiter, PT Brooks, L Irber, SEK Joslin, CM Reid, C Scott, CT Brown, ... GigaScience 10 (1), giaa140, 2021 | 36 | 2021 |
| Evaluating Metagenome Assembly on a Simple Defined Community with Many Strain Variants S Awad, L Irber, CT Brown bioRxiv, 155358, 2017 | 27 | 2017 |
| Context-aware genomic surveillance reveals hidden transmission of a carbapenemase-producing Klebsiella pneumoniae A Viehweger, C Blumenscheit, N Lippmann, KL Wyres, C Brandt, JB Hans, ... Microbial genomics 7 (12), 2021 | 13 | 2021 |
| Efficient cardinality estimation for k-mers in large DNA sequencing data sets: k-mer cardinality estimation LC Irber Jr, CT Brown biorxiv, 056846, 2016 | 10 | 2016 |
| khmer k-mer counting & filtering FTW MR Crusoe, G Edvenson, J Fish, A Howe, L Irber, E McDonald, J Nahum, ... | 6 | 2010 |
| Sourmash branchwater enables lightweight petabyte-scale sequence search L Irber, NT Pierce-Ward, CT Brown bioRxiv, 2022.11. 02.514947, 2022 | 4 | 2022 |
| Meta-analysis of metagenomes via machine learning and assembly graphs reveals strain switches in Crohn’s disease TE Reiter, L Irber, AA Gingrich, D Haynes, NT Pierce-Ward, PT Brooks, ... bioRxiv, 2022.06. 30.498290, 2022 | 4 | 2022 |
| Decentralizing Indices for Genomic Data LC Irber Jr University of California, Davis, 2020 | 4 | 2020 |
| khmer release v2. 1: software for biological sequence analysis D Standage, A Aliyari, L Cohen, M Crusoe, T Head, L Irber, S Joslin, ... Journal of Open Source Software 2 (15), 272, 2017 | 4 | 2017 |
| Protein k-mers enable assembly-free microbial metapangenomics TE Reiter, NT Pierce-Ward, L Irber, OB Botvinnik, CT Brown bioRxiv, 2022.06. 27.497795, 2022 | 3 | 2022 |
| Biogeographic Distribution of Five Antarctic Cyanobacteria Using Large-Scale k-mer Searching with sourmash branchwater J Lumian, D Sumner, C Grettenberger, AD Jungblut, L Irber, ... bioRxiv, 2022.10. 27.514113, 2022 | 3 | 2022 |
| Amino Acid k-mers enable assembly-and alignment-free sequence analysis NT Pierce-Ward, OB Botvinnik, TE Reiter, L Irber, CT Brown Manubot, 2022 | 2 | 2022 |
| An objective reference system for studying rings in the ocean GP Castelão, LC Irber Jr, ABMV Boas Computers & geosciences 61, 43-49, 2013 | 2 | 2013 |
C. Titus BrownProfessor, UC DavisVerified email at ucdavis.edu
