| The RAST Server: rapid annotations using subsystems technology RK Aziz, D Bartels, AA Best, M DeJongh, T Disz, RA Edwards, K Formsma, ... BMC genomics 9 (1), 1-15, 2008 | 11183 | 2008 |
| The SEED and the Rapid Annotation of microbial genomes using Subsystems Technology (RAST) R Overbeek, R Olson, GD Pusch, GJ Olsen, JJ Davis, T Disz, RA Edwards, ... Nucleic acids research 42 (D1), D206-D214, 2014 | 4160 | 2014 |
| The subsystems approach to genome annotation and its use in the project to annotate 1000 genomes R Overbeek, T Begley, RM Butler, JV Choudhuri, HY Chuang, M Cohoon, ... Nucleic acids research 33 (17), 5691-5702, 2005 | 2207 | 2005 |
| RASTtk: A modular and extensible implementation of the RAST algorithm for building custom annotation pipelines and annotating batches of genomes T Brettin, JJ Davis, T Disz, RA Edwards, S Gerdes, GJ Olsen, R Olson, ... Scientific reports 5 (1), 8365, 2015 | 2108 | 2015 |
| The use of gene clusters to infer functional coupling R Overbeek, M Fonstein, M D’souza, GD Pusch, N Maltsev Proceedings of the National Academy of Sciences 96 (6), 2896-2901, 1999 | 1596 | 1999 |
| Improvements to PATRIC, the all-bacterial bioinformatics database and analysis resource center AR Wattam, JJ Davis, R Assaf, S Boisvert, T Brettin, C Bun, N Conrad, ... Nucleic acids research 45 (D1), D535-D542, 2017 | 1398 | 2017 |
| PATRIC, the bacterial bioinformatics database and analysis resource AR Wattam, D Abraham, O Dalay, TL Disz, T Driscoll, JL Gabbard, ... Nucleic acids research 42 (D1), D581-D591, 2014 | 1289 | 2014 |
| Genome sequence of Bacillus cereus and comparative analysis with Bacillus anthracis N Ivanova, A Sorokin, I Anderson, N Galleron, B Candelon, V Kapatral, ... Nature 423 (6935), 87-91, 2003 | 976 | 2003 |
| The PATRIC Bioinformatics Resource Center: expanding data and analysis capabilities JJ Davis, AR Wattam, RK Aziz, T Brettin, R Butler, RM Butler, P Chlenski, ... Nucleic acids research 48 (D1), D606-D612, 2020 | 745 | 2020 |
| Complete sequence and comparative genome analysis of the dairy bacterium Streptococcus thermophilus A Bolotin, B Quinquis, P Renault, A Sorokin, SD Ehrlich, S Kulakauskas, ... Nature biotechnology 22 (12), 1554-1558, 2004 | 626 | 2004 |
| Phylogenetic conservatism of functional traits in microorganisms AC Martiny, K Treseder, G Pusch The ISME journal 7 (4), 830-838, 2013 | 527 | 2013 |
| WIT: integrated system for high-throughput genome sequence analysis and metabolic reconstruction R Overbeek, N Larsen, GD Pusch, M D’Souza, ES Jr, N Kyrpides, ... Nucleic acids research 28 (1), 123-125, 2000 | 497 | 2000 |
| Genome Sequence and Analysis of the Oral Bacterium Fusobacterium nucleatum Strain ATCC 25586 V Kapatral, I Anderson, N Ivanova, G Reznik, T Los, A Lykidis, ... Journal of bacteriology 184 (7), 2005-2018, 2002 | 425 | 2002 |
| The ERGO TM genome analysis and discovery system R Overbeek, N Larsen, T Walunas, M D'Souza, G Pusch, E Selkov Jr, ... Nucleic acids research 31 (1), 164-171, 2003 | 282 | 2003 |
| SEED servers: high-performance access to the SEED genomes, annotations, and metabolic models RK Aziz, S Devoid, T Disz, RA Edwards, CS Henry, GJ Olsen, R Olson, ... PloS one 7 (10), e48053, 2012 | 220 | 2012 |
| Use of contiguity on the chromosome to predict functional coupling R Overbeek, M Fonstein, M D'Souza, GD Pusch, N Maltsev In Silico Biology 1 (2), 93-108, 1999 | 211 | 1999 |
| Introducing the bacterial and viral bioinformatics resource center (BV-BRC): a resource combining PATRIC, IRD and ViPR RD Olson, R Assaf, T Brettin, N Conrad, C Cucinell, JJ Davis, ... Nucleic acids research 51 (D1), D678-D689, 2023 | 147 | 2023 |
| PATtyFams: protein families for the microbial genomes in the PATRIC database JJ Davis, S Gerdes, GJ Olsen, R Olson, GD Pusch, M Shukla, V Vonstein, ... Frontiers in microbiology 7, 118, 2016 | 145 | 2016 |
| The National Microbial Pathogen Database Resource (NMPDR): a genomics platform based on subsystem annotation LK McNeil, C Reich, RK Aziz, D Bartels, M Cohoon, T Disz, RA Edwards, ... Nucleic acids research 35 (suppl_1), D347-D353, 2007 | 119 | 2007 |
| Comparative genome analysis of Bacillus cereus group genomes with Bacillus subtilis I Anderson, A Sorokin, V Kapatral, G Reznik, A Bhattacharya, ... FEMS Microbiology Letters 250 (2), 175-184, 2005 | 98 | 2005 |
Veronika VonsteinFellowship for Interpretation of GenomesVerified email at theFIG.info
