Robert M. Waterhouse

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Zdobnov EMUniversity of Geneva Medical School and Swiss Institute of Bioinformatics, Switzerland.Verified email at unige.ch
Panagiotis IoannidisPostdoctoral fellow, Institute of Computer Science, FORTHVerified email at ics.forth.gr
Evgenia V. KriventsevaUniversity of Geneva, Swiss Institute of BioinformaticsVerified email at unige.ch
Mosè ManniUniversity of Geneva Medical School and Swiss Institute of Bioinformatics, Switzerland.Verified email at unige.ch
George ChristophidesImperial College LondonVerified email at imperial.ac.uk
Daniel E. NeafseyHarvard TH Chan School of Public Health; Broad InstituteVerified email at broadinstitute.org
Igor SharakhovVirginia TechVerified email at vt.edu
Marc Robinson-RechaviProfessor of Bioinformatics, Department of Ecology and Evolution UNIL, & Group leader SIBVerified email at unil.ch
Toni GabaldonGroup Leader, Institute for Research in Biomedicine (IRB), Barcelona Supercomputing Centre (BSC)Verified email at crg.es
Sara N MitchellSenior Scientist, Verily Life SciencesVerified email at google.com
Michael C. FontaineCNRS researcher @ MIVEGEC | GELIFES-U GroningenVerified email at cnrs.fr
Matthew W. HahnDistinguished Professor of Biology and Computer Science, Indiana UniversityVerified email at indiana.edu
Scott EmrichAssociate Professor, University of Tennessee (EECS)Verified email at utk.edu
Hugh M. RobertsonProfessor Emeritus of Entomology, University of Illinois at Urbana-ChampaignVerified email at uiuc.edu
Michael PovelonesUniversity of PennsylvaniaVerified email at vet.upenn.edu
Eckart StolleHead of Section Insect Comparative Genomics, Zoological Research Museum Alexander Koenig (ZFMK)Verified email at leibniz-zfmk.de
Karen M. KapheimAssociate Professor of Biology, Utah State UniversityVerified email at usu.edu
Christophe DessimozProfessor at UNIL and Director of SIB Swiss Institute of BioinformaticsVerified email at unil.ch
Yi-Chieh WuHarvey Mudd CollegeVerified email at cs.hmc.edu
James B. PeaseDepartment of Evolution, Ecology, and Organismal Biology, The Ohio State UniversityVerified email at osu.edu

Robert M. Waterhouse

SIB Swiss Institute of Bioinformatics

Verified email at sib.swiss - Homepage

Environmental Bioinformatics


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BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs FA Simão, RM Waterhouse, P Ioannidis, EV Kriventseva, EM Zdobnov Bioinformatics 31 (19), 3210-3212, 2015	10929	2015
BUSCO applications from quality assessments to gene prediction and phylogenomics RM Waterhouse, M Seppey, FA Simão, M Manni, P Ioannidis, ... Molecular biology and evolution 35 (3), 543-548, 2018	1964	2018
The genome of the model beetle and pest Tribolium castaneum S Richards, RA Gibbs, GM Weinstock, SJ Brown, R Denell, RW Beeman, ... Nature 452 (7190), 949-955, 2008	1468	2008
Functional and Evolutionary Insights from the Genomes of Three Parasitoid Nasonia Species JH Werren, S Richards, CA Desjardins, O Niehuis, J Gadau, ... Science 327 (5963), 343-348, 2010	939	2010
Evolutionary dynamics of immune-related genes and pathways in disease-vector mosquitoes RM Waterhouse, EV Kriventseva, S Meister, Z Xi, KS Alvarez, ... Science's STKE 316 (5832), 1738, 2007	693	2007
Extensive introgression in a malaria vector species complex revealed by phylogenomics MC Fontaine, JB Pease, A Steele, RM Waterhouse, DE Neafsey, ... Science 347 (6217), 1258524, 2015	623	2015
Highly evolvable malaria vectors: The genomes of 16 Anopheles mosquitoes DE Neafsey, RM Waterhouse, MR Abai, SS Aganezov, MA Alekseyev, ... Science 347 (6217), 1258522, 2015	608	2015
Genome sequences of the human body louse and its primary endosymbiont provide insights into the permanent parasitic lifestyle EF Kirkness, BJ Haas, W Sun, HR Braig, MA Perotti, JM Clark, SH Lee, ... Proceedings of the National Academy of Sciences 107 (27), 12168-12173, 2010	574	2010
Sequencing of Culex quinquefasciatus establishes a platform for mosquito comparative genomics P Arensburger, K Megy, RM Waterhouse, J Abrudan, P Amedeo, B Antelo, ... Science 330 (6000), 86-88, 2010	542	2010
Genomic insights into the Ixodes scapularis tick vector of Lyme disease M Gulia-Nuss, AB Nuss, JM Meyer, DE Sonenshine, RM Roe, ... Nature communications 7 (1), 10507, 2016	514	2016
OrthoDB v9. 1: cataloging evolutionary and functional annotations for animal, fungal, plant, archaeal, bacterial and viral orthologs EM Zdobnov, F Tegenfeldt, D Kuznetsov, RM Waterhouse, FA Simão, ... Nucleic acids research 45 (D1), D744-D749, 2017	454	2017
Finding the missing honey bee genes: lessons learned from a genome upgrade CG Elsik, KC Worley, AK Bennett, M Beye, F Camara, CP Childers, ... BMC genomics 15, 1-29, 2014	435	2014
OrthoDB: a hierarchical catalog of animal, fungal and bacterial orthologs RM Waterhouse, F Tegenfeldt, J Li, EM Zdobnov, EV Kriventseva Nucleic Acids Research 41 (D1), D358-D365, 2013	429	2013
Genomic signatures of evolutionary transitions from solitary to group living KM Kapheim, H Pan, C Li, SL Salzberg, D Puiu, T Magoc, HM Robertson, ... Science 348 (6239), 1139-1143, 2015	398	2015
The genomes of two key bumblebee species with primitive eusocial organization BM Sadd, SM Barribeau, G Bloch, DC De Graaf, P Dearden, CG Elsik, ... Genome biology 16 (1), 1-32, 2015	397	2015
Genome of Rhodnius prolixus, an insect vector of Chagas disease, reveals unique adaptations to hematophagy and parasite infection RD Mesquita, RJ Vionette-Amaral, C Lowenberger, R Rivera-Pomar, ... Proceedings of the National Academy of Sciences 112 (48), 14936-14941, 2015	362	2015
Phylogenomics and the evolution of hemipteroid insects KP Johnson, CH Dietrich, F Friedrich, RG Beutel, B Wipfler, RS Peters, ... Proceedings of the National Academy of Sciences 115 (50), 12775-12780, 2018	334	2018
Genome sequence of the Asian Tiger mosquito, Aedes albopictus, reveals insights into its biology, genetics, and evolution XG Chen, X Jiang, J Gu, M Xu, Y Wu, Y Deng, C Zhang, M Bonizzoni, ... Proceedings of the National Academy of Sciences 112 (44), E5907-E5915, 2015	300	2015
OrthoDB v8: update of the hierarchical catalog of orthologs and the underlying free software EV Kriventseva, F Tegenfeldt, TJ Petty, RM Waterhouse, FA Simão, ... Nucleic acids research 43 (D1), D250-D256, 2015	298	2015
Leucine-rich repeat protein complex activates mosquito complement in defense against Plasmodium parasites M Povelones, RM Waterhouse, FC Kafatos, GK Christophides Science 324 (5924), 258-261, 2009	271	2009

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