Jean-Jack M. Riethoven

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Yong Ding (丁勇)University of Science & Technology of China (USTC，中国科学技术大学)Verified email at ustc.edu.cn
Arunakumar Gangaplara, PhDSenior R and D ScientistVerified email at miltenyibiotec.com
Alphonse Thanaraj ThangavelPrincipal Scientist and Head of Population Genomics and Genetics Epidemiology Unit, Dasman DiabetesVerified email at dasmaninstitute.org
David J SteffenUniversity Of NebraskaVerified email at unl.edu
Rakesh H. Basavalingappa, DVM, MV...University of Nebraska-Lincoln; Aclaris Therapeutics, Inc.Verified email at unl.edu
Sridhar A MalkaramAssistant Research Professor, West Virginia State UniversityVerified email at wvstateu.edu
Istvan LadungaProfessor Emeritus of Computational Biology, University of Nebraska-LincolnVerified email at unl.edu
Ning LiuNational Engineering Research Center for Vegetables (Beijing Vegetable Research Center))Verified email at nercv.org
Chandirasegaran MassilamanyNational Cancer Institute/National Institutes of HealthVerified email at nih.gov
Seong-il EyunLife Science at Chung-Ang University, KoreaVerified email at cau.ac.kr
Rong LiuInstitute of the Environment and Sustainability, University of California, Los AngelesVerified email at ucla.edu
Alan RobinsonMRC Mitochondrial Biology Unit, University of CambridgeVerified email at mrc-mbu.cam.ac.uk
Nuno Barbosa-MoraisResearch Group Leader, Instituto de Medicina Molecular - LisbonVerified email at medicina.ulisboa.pt
Daniel CiobanuUniversity of NebraskaVerified email at unl.edu
Hiep VuUniversity of Nebraska-LincolnVerified email at unl.edu
Ivan C. NdamukongEast Carolina University/University Of Nebraska-LincolnVerified email at ecu.edu
Qingsheng Li, Ph. D., Willa Cather Prof...University of Nebraska-LincolnVerified email at unl.edu
Robersy SanchezPennsylvania State UniversityVerified email at psu.edu
Chi ZhangSchool of Biological Sciences, University of Nebraska, Lincoln, NEVerified email at unl.edu
Angela PannierSwarts Family Chair in Biological Systems EngineeringVerified email at unl.edu

Jean-Jack M. Riethoven

University of Nebraska-Lincoln

Verified email at riethoven.org - Homepage

bioinformatics computational biology massive parallel pipelines


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ASD: a bioinformatics resource on alternative splicing S Stamm, JJ Riethoven, V Le Texier, C Gopalakrishnan, V Kumanduri, ... Nucleic acids research 34 (suppl_1), D46-D55, 2006	289	2006
ASD: the alternative splicing database TA Thanaraj, S Stamm, F Clark, JJ Riethoven, V Le Texier, J Muilu Nucleic acids research 32 (suppl_1), D64-D69, 2004	278	2004
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana Y Ding, N Liu, L Virlouvet, JJ Riethoven, M Fromm, Z Avramova BMC plant biology 13, 1-11, 2013	266	2013
Dynamic changes in genome-wide histone H3 lysine 4 methylation patterns in response to dehydration stress in Arabidopsis thaliana K Van Dijk, Y Ding, S Malkaram, JJM Riethoven, R Liu, J Yang, P Laczko, ... BMC plant biology 10, 1-12, 2010	229	2010
Regulatory regions in DNA: promoters, enhancers, silencers, and insulators JJM Riethoven Computational biology of transcription factor binding, 33-42, 2010	196	2010
Dehydration stress memory genes of Zea mays; comparison with Arabidopsis thaliana Y Ding, L Virlouvet, N Liu, JJ Riethoven, M Fromm, Z Avramova BMC Plant Biology 14, 1-15, 2014	133	2014
ASTD: the alternative splicing and transcript diversity database G Koscielny, V Le Texier, C Gopalakrishnan, V Kumanduri, JJ Riethoven, ... Genomics 93 (3), 213-220, 2009	129	2009
miR-27b*, an oxidative stress-responsive microRNA modulates nuclear factor-kB pathway in RAW 264.7 cells S Thulasingam, C Massilamany, A Gangaplara, H Dai, S Yarbaeva, ... Molecular and cellular biochemistry 352, 181-188, 2011	125	2011
Role of whole grains versus fruits and vegetables in reducing subclinical inflammation and promoting gastrointestinal health in individuals affected by overweight and obesity … JC Kopf, MJ Suhr, J Clarke, S Eyun, JJM Riethoven, AE Ramer-Tait, ... Nutrition journal 17, 1-13, 2018	104	2018
Arabidopsis MSH1 mutation alters the epigenome and produces heritable changes in plant growth KS Virdi, JD Laurie, YZ Xu, J Yu, MR Shao, R Sanchez, H Kundariya, ... Nature communications 6 (1), 6386, 2015	104	2015
Osmotic stress induces phosphorylation of histone H3 at threonine 3 in pericentromeric regions of Arabidopsis thaliana Z Wang, JA Casas-Mollano, J Xu, JJM Riethoven, C Zhang, H Cerutti Proceedings of the National Academy of Sciences 112 (27), 8487-8492, 2015	87	2015
Exon-primed intron-crossing (EPIC) markers for non-model teleost fishes C Li, JJM Riethoven, L Ma BMC evolutionary biology 10, 1-12, 2010	87	2010
XEMBL: distributing EMBL data in XML format L Wang, JJ Riethoven, A Robinson Bioinformatics 18 (8), 1147-1148, 2002	79	2002
TheArabidopsis Chromatin Modifier ATX1, the Myotubularin-like AtMTM, and the response to Drought; a view from the other end of the pathway Y Ding, H Lapko, I Ndamukong, Y Xia, A Al-Abdallat, S Lalithambika, ... Plant signaling & behavior 4 (11), 1049-1058, 2009	52	2009
Trans-10, cis-12 conjugated linoleic acid activates the integrated stress response pathway in adipocytes PC LaRosa, JJM Riethoven, H Chen, Y Xia, Y Zhou, M Chen, J Miner, ... Physiological genomics 31 (3), 544-553, 2007	45	2007
Deep RNA sequencing reveals hidden features and dynamics of early gene transcription in Paramecium bursaria chlorella virus 1 G Blanc, M Mozar, IV Agarkova, JR Gurnon, G Yanai-Balser, JM Rowe, ... PLoS One 9 (3), e90989, 2014	44	2014
AltTrans: transcript pattern variants annotated for both alternative splicing and alternative polyadenylation V Le Texier, JJ Riethoven, V Kumanduri, C Gopalakrishnan, F Lopez, ... BMC bioinformatics 7, 1-13, 2006	44	2006
De Novo Transcriptome Assembly from Fat Body and Flight Muscles Transcripts to Identify Morph-Specific Gene Expression Profiles in Gryllus firmus N Nanoth Vellichirammal, AJ Zera, RJ Schilder, C Wehrkamp, ... PloS one 9 (1), e82129, 2014	42	2014
ORYZA simulation modules for potential and nitrogen limited rice production. H Drenth, HFM Ten Berge, JJM Riethoven	41	1994
Numerical optimization of nitrogen application to rice. Part II. Field evaluations HFM Ten Berge, Q Shi, Z Zheng, KS Rao, JJM Riethoven, X Zhong Field crops research 51 (1-2), 43-54, 1997	36	1997

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