| The MARTINI Force Field SJ Marrink, M Fuhrmans, HJ Risselada, X Periole Coarse-Graining of Condensed Phase and Biomolecular Systems, 5, 2008 | 3510* | 2008 |
| The MARTINI coarse-grained force field: extension to proteins L Monticelli, SK Kandasamy, X Periole, RG Larson, DP Tieleman, ... Journal of chemical theory and computation 4 (5), 819-834, 2008 | 1736 | 2008 |
| Improved parameters for the martini coarse-grained protein force field DH de Jong, G Singh, WFD Bennett, C Arnarez, TA Wassenaar, ... Journal of Chemical Theory and Computation 9 (1), 687-697, 2012 | 557 | 2012 |
| Combining an elastic network with a coarse-grained molecular force field: structure, dynamics, and intermolecular recognition X Periole, M Cavalli, SJ Marrink, MA Ceruso Journal of Chemical Theory and Computation 5 (9), 2531-2543, 2009 | 351 | 2009 |
| G protein-coupled receptors self-assemble in dynamics simulations of model bilayers X Periole, T Huber, SJ Marrink, TP Sakmar Journal of the American Chemical Society 129 (33), 10126-10132, 2007 | 311 | 2007 |
| The power of coarse graining in biomolecular simulations HI Ingólfsson, CA Lopez, JJ Uusitalo, DH de Jong, SM Gopal, X Periole, ... Wiley Interdisciplinary Reviews: Computational Molecular Science 4 (3), 225-248, 2014 | 296 | 2014 |
| Structural determinants of the supramolecular organization of G protein-coupled receptors in bilayers X Periole, AM Knepp, TP Sakmar, SJ Marrink, T Huber Journal of the American Chemical Society 134 (26), 10959-10965, 2012 | 182 | 2012 |
| Identification of cardiolipin binding sites on cytochrome c oxidase at the entrance of proton channels C Arnarez, SJ Marrink, X Periole Scientific reports 3, 1263, 2013 | 124 | 2013 |
| Identification of cardiolipin binding sites on cytochrome c oxidase at the entrance of proton channels C Arnarez, SJ Marrink, X Periole Scientific reports 3, 1263, 2013 | 124 | 2013 |
| Evidence for cardiolipin binding sites on the membrane-exposed surface of the cytochrome bc 1 C Arnarez, JP Mazat, J Elezgaray, SJ Marrink, X Periole Journal of the American Chemical Society 135 (8), 3112-3120, 2013 | 120 | 2013 |
| Convergence and sampling efficiency in replica exchange simulations of peptide folding in explicit solvent X Periole, AE Mark The Journal of chemical physics 126 (1), 01B601, 2007 | 119 | 2007 |
| Refining homology models by combining replica‐exchange molecular dynamics and statistical potentials J Zhu, H Fan, X Periole, B Honig, AE Mark Proteins: Structure, Function, and Bioinformatics 72 (4), 1171-1188, 2008 | 88 | 2008 |
| The Martini coarse-grained force field X Periole, SJ Marrink Biomolecular Simulations, 533-565, 2013 | 83 | 2013 |
| Comment on “On using a too large integration time step in molecular dynamics simulations of coarse-grained molecular models” by M. Winger, D. Trzesniak, R. Baron and WF van … SJ Marrink, X Periole, DP Tieleman, AH de Vries Physical Chemistry Chemical Physics 12 (9), 2254-2256, 2010 | 69 | 2010 |
| Factors that affect the degree of twist in β-sheet structures: a molecular dynamics simulation study of a cross-β filament of the GNNQQNY peptide X Periole, A Rampioni, M Vendruscolo, AE Mark The Journal of Physical Chemistry B 113 (6), 1728-1737, 2009 | 69 | 2009 |
| Simple Two-Body Cation−Water Interaction Potentials Derived from ab Initio Calculations. Comparison to Results Obtained with an Empirical Approach X Periole, D Allouche, JP Daudey, YH Sanejouand The Journal of Physical Chemistry B 101 (25), 5018-5025, 1997 | 68 | 1997 |
| Key issues in the computational simulation of GPCR function: representation of loop domains EL Mehler, X Periole, SA Hassan, H Weinstein Journal of computer-aided molecular design 16 (11), 841-853, 2002 | 62 | 2002 |
| Molecular dynamics simulations of transducin: interdomain and front to back communication in activation and nucleotide exchange MA Ceruso, X Periole, H Weinstein Journal of molecular biology 338 (3), 469-481, 2004 | 60 | 2004 |
| Rhodopsin forms a dimer with cytoplasmic helix 8 contacts in native membranes AM Knepp, X Periole, SJ Marrink, TP Sakmar, T Huber Biochemistry 51 (9), 1819-1821, 2012 | 57 | 2012 |
| Dimerization of amino acid side chains: lessons from the comparison of different force fields DH de Jong, X Periole, SJ Marrink Journal of chemical theory and computation 8 (3), 1003-1014, 2012 | 50 | 2012 |
Siewert J. MarrinkProfessor of Molecular Dynamics, University of GroningenVerified email at rug.nl
