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Thomas Pfau
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Creation and analysis of biochemical constraint-based models using the COBRA Toolbox v. 3.0
L Heirendt, S Arreckx, T Pfau, SN Mendoza, A Richelle, A Heinken, ...
Nature protocols 14 (3), 639-702, 2019
6272019
SBML Level 3: an extensible format for the exchange and reuse of biological models
SM Keating, D Waltemath, M König, F Zhang, A Dräger, C Chaouiya, ...
Molecular systems biology 16 (8), e9110, 2020
1032020
The intertwined metabolism during symbiotic nitrogen fixation elucidated by metabolic modelling
T Pfau, N Christian, SK Masakapalli, LJ Sweetlove, MG Poolman, ...
Scientific reports 8 (1), 1-11, 2018
392018
Genome-scale metabolic reconstruction of the symbiosis between a leguminous plant and a nitrogen-fixing bacterium
GC diCenzo, M Tesi, T Pfau, A Mengoni, M Fondi
Nature communications 11 (1), 1-11, 2020
382020
Constraint based modeling going multicellular
PR Martins Conde, T Sauter, T Pfau
Frontiers in molecular biosciences 3, 3, 2016
352016
Systems approaches to modelling pathways and networks
T Pfau, N Christian, O Ebenhöh
Briefings in functional genomics 10 (5), 266-279, 2011
322011
Benchmarking procedures for high-throughput context specific reconstruction algorithms
MP Pacheco, T Pfau, T Sauter
Frontiers in physiology 6, 410, 2016
292016
Towards improved genome-scale metabolic network reconstructions: unification, transcript specificity and beyond
T Pfau, MP Pacheco, T Sauter
Briefings in Bioinformatics 17 (6), 1060-1069, 2016
202016
Insight into metabolic pathways of the potential biofuel producer, Paenibacillus polymyxa ICGEB2008
N Adlakha, T Pfau, O Ebenhöh, SS Yazdani
Biotechnology for biofuels 8 (1), 1-10, 2015
142015
Genome-scale metabolic reconstruction of the symbiosis between a leguminous plant and a nitrogen-fixing bacterium. Nat Commun 11: 2574
GC diCenzo, M Tesi, T Pfau, A Mengoni, M Fondi
82020
Modelling metabolic interactions in the legume-rhizobia symbiosis
T Pfau
University of Aberdeen, Aberdeen, United Kingdom, 2013
52013
The intertwined metabolism of Medicago truncatula and its nitrogen fixing symbiont Sinorhizobium meliloti elucidated by genome-scale metabolic models
T Pfau, N Christian, SK Masakapalli, LJ Sweetlove, MG Poolman, ...
bioRxiv, 067348, 2016
42016
A dynamic multi-tissue model to study human metabolism
P Martins Conde, T Pfau, M Pires Pacheco, T Sauter
NPJ systems biology and applications 7 (1), 1-16, 2021
32021
An efficient machine learning method to solve imbalanced data in metabolic disease prediction
V Cecchini, TP Nguyen, T Pfau, S De Landtsheer, T Sauter
2019 11th International Conference on Knowledge and Systems Engineering (KSE …, 2019
32019
IDARE2—Simultaneous Visualisation of Multiomics Data in Cytoscape
T Pfau, M Galhardo, J Lin, T Sauter
Metabolites 11 (5), 300, 2021
22021
A Virtual Nodule Environment (ViNE) for modelling the inter-kingdom metabolic integration during symbiotic nitrogen fixation
M Tesi, T Pfau, A Mengoni, M Fondi
bioRxiv, 765271, 2019
22019
Project-based learning course on metabolic network modelling in computational systems biology
T Sauter, T Bintener, A Kishk, L Presta, T Prohaska, D Guignard, N Zeng, ...
PLoS computational biology 18 (1), e1009711, 2022
2022
A dynamic multi-tissue model to study human metabolism
MC Patricia, T Pfau, PM Pires, T Sauter
NPJ Systems Biology and Applications 7 (1), 2021
2021
CARDIOVASCULAR RISK PREDICTION-A SYSTEMS MEDICINE APPROACH
I Gergei, T Pfau, BK Krämer, J Schneider, W März, T Sauter
Journal of Hypertension 36, e32, 2018
2018
Exploring energy and nitrogen metabolismin the Legume-Rhizobia symbiosis
T Pfau, O Ebenhoeh
EUROPEAN BIOPHYSICS JOURNAL WITH BIOPHYSICS LETTERS 42, S75-S75, 2013
2013
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Articles 1–20