| Extensive unexplored human microbiome diversity revealed by over 150,000 genomes from metagenomes spanning age, geography, and lifestyle E Pasolli, F Asnicar, S Manara, M Zolfo, N Karcher, F Armanini, F Beghini, ... Cell 176 (3), 649-662. e20, 2019 | 1180 | 2019 |
| Integrating taxonomic, functional, and strain-level profiling of diverse microbial communities with bioBakery 3 F Beghini, LJ McIver, A Blanco-Míguez, L Dubois, F Asnicar, S Maharjan, ... elife 10, e65088, 2021 | 991 | 2021 |
| Mother-to-infant microbial transmission from different body sites shapes the developing infant gut microbiome P Ferretti, E Pasolli, A Tett, F Asnicar, V Gorfer, S Fedi, F Armanini, ... Cell host & microbe 24 (1), 133-145. e5, 2018 | 986 | 2018 |
| Metagenomic analysis of colorectal cancer datasets identifies cross-cohort microbial diagnostic signatures and a link with choline degradation AM Thomas, P Manghi, F Asnicar, E Pasolli, F Armanini, M Zolfo, ... Nature medicine 25 (4), 667-678, 2019 | 661 | 2019 |
| Microbiome connections with host metabolism and habitual diet from 1,098 deeply phenotyped individuals F Asnicar, SE Berry, AM Valdes, LH Nguyen, G Piccinno, DA Drew, ... Nature medicine 27 (2), 321-332, 2021 | 578 | 2021 |
| Precise phylogenetic analysis of microbial isolates and genomes from metagenomes using PhyloPhlAn 3.0 F Asnicar, AM Thomas, F Beghini, C Mengoni, S Manara, P Manghi, ... Nature communications 11 (1), 2500, 2020 | 399 | 2020 |
| Accessible, curated metagenomic data through ExperimentHub E Pasolli, L Schiffer, P Manghi, A Renson, V Obenchain, DT Truong, ... Nature methods 14 (11), 1023-1024, 2017 | 334 | 2017 |
| Extending and improving metagenomic taxonomic profiling with uncharacterized species using MetaPhlAn 4 A Blanco-Míguez, F Beghini, F Cumbo, LJ McIver, KN Thompson, M Zolfo, ... Nature Biotechnology 41 (11), 1633-1644, 2023 | 213 | 2023 |
| Reporting guidelines for human microbiome research: the STORMS checklist C Mirzayi, A Renson, Genomic Standards Consortium, ... Nature medicine 27 (11), 1885-1892, 2021 | 201 | 2021 |
| Critical assessment of metagenome interpretation: the second round of challenges F Meyer, A Fritz, ZL Deng, D Koslicki, TR Lesker, A Gurevich, G Robertson, ... Nature methods 19 (4), 429-440, 2022 | 189 | 2022 |
| Unexplored diversity and strain-level structure of the skin microbiome associated with psoriasis A Tett, E Pasolli, S Farina, DT Truong, F Asnicar, M Zolfo, F Beghini, ... npj Biofilms and Microbiomes 3 (1), 14, 2017 | 170 | 2017 |
| Large-scale comparative metagenomics of Blastocystis, a common member of the human gut microbiome F Beghini, E Pasolli, TD Truong, L Putignani, SM Cacciò, N Segata The ISME journal 11 (12), 2848-2863, 2017 | 160 | 2017 |
| Variability of strain engraftment and predictability of microbiome composition after fecal microbiota transplantation across different diseases G Ianiro, M Punčochář, N Karcher, S Porcari, F Armanini, F Asnicar, ... Nature Medicine 28 (9), 1913-1923, 2022 | 100 | 2022 |
| Microbial genomes from non-human primate gut metagenomes expand the primate-associated bacterial tree of life with over 1000 novel species S Manara, F Asnicar, F Beghini, D Bazzani, F Cumbo, M Zolfo, E Nigro, ... Genome biology 20, 1-16, 2019 | 57 | 2019 |
| Precise phylogenetic analysis of microbial isolates and genomes from metagenomes using PhyloPhlAn 3.0. Nat Commun 11: 2500 F Asnicar, AM Thomas, F Beghini, C Mengoni, S Manara, P Manghi, ... | 52 | 2020 |
| Sociodemographic variation in the oral microbiome A Renson, HE Jones, F Beghini, N Segata, CP Zolnik, M Usyk, TU Moody, ... Annals of epidemiology 35, 73-80. e2, 2019 | 51 | 2019 |
| Tobacco exposure associated with oral microbiota oxygen utilization in the New York City Health and Nutrition Examination Study F Beghini, A Renson, CP Zolnik, L Geistlinger, M Usyk, TU Moody, ... Annals of epidemiology 34, 18-25. e3, 2019 | 32 | 2019 |
| How inoculation affects the development and the performances of microalgal-bacterial consortia treating real municipal wastewater S Petrini, P Foladori, F Beghini, F Armanini, N Segata, G Andreottola Journal of environmental management 263, 110427, 2020 | 29 | 2020 |
| Commensal Bifidobacterium Strains Enhance the Efficacy of Neo-Epitope Based Cancer Vaccines M Tomasi, M Dalsass, F Beghini, I Zanella, E Caproni, L Fantappiè, ... Vaccines 9 (11), 1356, 2021 | 16 | 2021 |
| MetaPhlAn 4 profiling of unknown species-level genome bins improves the characterization of diet-associated microbiome changes in mice P Manghi, A Blanco-Míguez, S Manara, A NabiNejad, F Cumbo, F Beghini, ... Cell Reports 42 (5), 2023 | 3 | 2023 |
Nicola SegataDepartment CIBIO, University of TrentoVerified email at unitn.it
