| Comprehensive functional genomic resource and integrative model for the human brain D Wang, S Liu, J Warrell, H Won, X Shi, FCP Navarro, D Clarke, M Gu, ... Science 362 (6420), eaat8464, 2018 | 805 | 2018 |
| A chemical genetic approach demonstrates that MPK 3/MPK 6 activation and NADPH oxidase‐mediated oxidative burst are two independent signaling events in plant immunity J Xu, J Xie, C Yan, X Zou, D Ren, S Zhang The Plant Journal 77 (2), 222-234, 2014 | 181 | 2014 |
| Prediction of homoprotein and heteroprotein complexes by protein docking and template‐based modeling: a CASP‐CAPRI experiment MF Lensink, S Velankar, A Kryshtafovych, SY Huang, ... Proteins: Structure, Function, and Bioinformatics 84, 323-348, 2016 | 166 | 2016 |
| Fully blind docking at the atomic level for protein-peptide complex structure prediction C Yan, X Xu, X Zou Structure 24 (10), 1842-1853, 2016 | 87 | 2016 |
| HiC-spector: a matrix library for spectral and reproducibility analysis of Hi-C contact maps KK Yan, GG Yardımcı, C Yan, WS Noble, M Gerstein Bioinformatics 33 (14), 2199-2201, 2017 | 84 | 2017 |
| Genomics and data science: an application within an umbrella FCP Navarro, H Mohsen, C Yan, S Li, M Gu, W Meyerson, M Gerstein Genome biology 20, 1-11, 2019 | 75 | 2019 |
| Supervised enhancer prediction with epigenetic pattern recognition and targeted validation A Sethi, M Gu, E Gumusgoz, L Chan, KK Yan, J Rozowsky, I Barozzi, ... Nature methods 17 (8), 807-814, 2020 | 71 | 2020 |
| MDockPeP: An ab‐initio protein–peptide docking server X Xu#, C Yan#, X Zou Journal of computational chemistry 39 (28), 2409-2413, 2018 | 68 | 2018 |
| Predicting peptide binding sites on protein surfaces by clustering chemical interactions C Yan, X Zou Biophysical Journal 108 (2), 215a, 2015 | 46 | 2015 |
| Iterative knowledge-based scoring functions derived from rigid and flexible decoy structures: evaluation with the 2013 and 2014 CSAR benchmarks C Yan, SZ Grinter, BR Merideth, Z Ma, X Zou Journal of chemical information and modeling 56 (6), 1013-1021, 2016 | 28 | 2016 |
| The EN-TEx resource of multi-tissue personal epigenomes & variant-impact models J Rozowsky, J Gao, B Borsari, YT Yang, T Galeev, G Gürsoy, CB Epstein, ... Cell 186 (7), 1493-1511. e40, 2023 | 19 | 2023 |
| Improving binding mode and binding affinity predictions of docking by ligand-based search of protein conformations: evaluation in D3R grand challenge 2015 X Xu, C Yan, X Zou Journal of computer-aided molecular design 31, 689-699, 2017 | 19 | 2017 |
| Inclusion of the orientational entropic effect and low‐resolution experimental information for protein–protein docking in Critical Assessment of PRedicted Interactions (CAPRI) SY Huang, C Yan, SZ Grinter, S Chang, L Jiang, X Zou Proteins: Structure, Function, and Bioinformatics 81 (12), 2183-2191, 2013 | 19 | 2013 |
| Automated large-scale file preparation, docking, and scoring: Evaluation of ITScore and STScore using the 2012 community structure–activity resource benchmark SZ Grinter, C Yan, SY Huang, L Jiang, X Zou Journal of chemical information and modeling 53 (8), 1905-1914, 2013 | 19 | 2013 |
| Computation and simulation of the structural characteristics of the kidney urea transporter and behaviors of urea transport Z Wang, T Yu, JP Sang, XW Zou, C Yan, X Zou The Journal of Physical Chemistry B 119 (16), 5124-5131, 2015 | 16 | 2015 |
| Performance of MDockPP in CAPRI rounds 28‐29 and 31‐35 including the prediction of water‐mediated interactions X Xu#, L Qiu#, C Yan#, Z Ma, SZ Grinter, X Zou Proteins: Structure, Function, and Bioinformatics 85 (3), 424-434, 2017 | 15 | 2017 |
| Protein complex structure prediction powered by multiple sequence alignments of interologs from multiple taxonomic ranks and AlphaFold2 Y Si, C Yan Briefings in Bioinformatics 23 (4), bbac208, 2022 | 10 | 2022 |
| Improved protein contact prediction using dimensional hybrid residual networks and singularity enhanced loss function Y Si, C Yan Briefings in Bioinformatics 22 (6), bbab341, 2021 | 9 | 2021 |
| Building a Hybrid Physical-Statistical Classifier for Predicting the Effect of Variants Related to Protein-Drug Interactions B Wang#, C Yan#, S Lou, P Emani, B Li, M Xu, X Kong, W Meyerson, ... Structure 27 (9), 1469-1481. e3, 2019 | 8 | 2019 |
| Modeling protein flexibility in molecular docking C Yan, X Zou Comprehensive Medicinal Chemistry III 3, pp. 319–328., 2017 | 8 | 2017 |
