Oliver Ratmann
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Genomics and epidemiology of the P. 1 SARS-CoV-2 lineage in Manaus, Brazil
NR Faria, TA Mellan, C Whittaker, IM Claro, DS Candido, S Mishra, ...
Science 372 (6544), 815-821, 2021
4152021
Transmission of SARS-CoV-2 Lineage B. 1.1. 7 in England: Insights from linking epidemiological and genetic data
E Volz, S Mishra, M Chand, JC Barrett, R Johnson, L Geidelberg, ...
MedRxiv, 2020.12. 30.20249034, 2021
3172021
Assessing transmissibility of SARS-CoV-2 lineage B. 1.1. 7 in England
E Volz, S Mishra, M Chand, JC Barrett, R Johnson, L Geidelberg, ...
Nature 593 (7858), 266-269, 2021
2662021
Model criticism based on likelihood-free inference, with an application to protein network evolution
O Ratmann, C Andrieu, C Wiuf, S Richardson
Proceedings of the National Academy of Sciences 106 (26), 10576-10581, 2009
1762009
Inference for nonlinear epidemiological models using genealogies and time series
DA Rasmussen, O Ratmann, K Koelle
PLoS computational biology 7 (8), e1002136, 2011
1702011
Using likelihood-free inference to compare evolutionary dynamics of the protein networks of H. pylori and P. falciparum
O Ratmann, O Jørgensen, T Hinkley, M Stumpf, S Richardson, C Wiuf
PLoS Computational Biology 3 (11), e230, 2007
1372007
Sources of HIV infection among men having sex with men and implications for prevention
O Ratmann, A Van Sighem, D Bezemer, A Gavryushkina, S Jurriaans, ...
Science translational medicine 8 (320), 320ra2-320ra2, 2016
982016
Report 21: Estimating COVID-19 cases and reproduction number in Brazil
TA Mellan, HH Hoeltgebaum, S Mishra, C Whittaker, RP Schnekenberg, ...
medRxiv, 2020
942020
State-level tracking of COVID-19 in the United States
HJT Unwin, S Mishra, VC Bradley, A Gandy, TA Mellan, H Coupland, ...
Nature communications 11 (1), 1-9, 2020
842020
PHYLOSCANNER: inferring transmission from within-and between-host pathogen genetic diversity
C Wymant, M Hall, O Ratmann, D Bonsall, T Golubchik, M de Cesare, ...
Molecular biology and evolution 35 (3), 719-733, 2018
832018
Improved algorithmic complexity for the 3SEQ recombination detection algorithm
HM Lam, O Ratmann, MF Boni
Molecular biology and evolution 35 (1), 247-251, 2018
692018
Age groups that sustain resurging COVID-19 epidemics in the United States
M Monod, A Blenkinsop, X Xi, D Hebert, S Bershan, S Tietze, M Baguelin, ...
Science 371 (6536), eabe8372, 2021
632021
Impact of cross-protective vaccines on epidemiological and evolutionary dynamics of influenza
N Arinaminpathy, O Ratmann, K Koelle, SL Epstein, GE Price, C Viboud, ...
Proceedings of the National Academy of Sciences 109 (8), 3173-3177, 2012
632012
Phylogenetic tools for generalized HIV-1 epidemics: findings from the PANGEA-HIV methods comparison
O Ratmann, EB Hodcroft, M Pickles, A Cori, M Hall, S Lycett, C Colijn, ...
Molecular biology and evolution 34 (1), 185-203, 2017
562017
Dispersion of the HIV-1 epidemic in men who have sex with men in the Netherlands: a combined mathematical model and phylogenetic analysis
D Bezemer, A Cori, O Ratmann, A van Sighem, HS Hermanides, ...
PLoS medicine 12 (11), e1001898, 2015
562015
Explaining rapid reinfections in multiple-wave influenza outbreaks: Tristan da Cunha 1971 epidemic as a case study
A Camacho, S Ballesteros, AL Graham, F Carrat, O Ratmann, B Cazelles
Proceedings of the Royal Society B: Biological Sciences 278 (1725), 3635-3643, 2011
552011
Cultural conformity generates extremely stable traditions in bird song
RF Lachlan, O Ratmann, S Nowicki
Nature communications 9 (1), 1-9, 2018
472018
Easy and accurate reconstruction of whole HIV genomes from short-read sequence data with shiver
C Wymant, F Blanquart, T Golubchik, A Gall, M Bakker, D Bezemer, ...
Virus evolution 4 (1), vey007, 2018
452018
OutbreakTools: a new platform for disease outbreak analysis using the R software
T Jombart, DM Aanensen, M Baguelin, P Birrell, S Cauchemez, ...
Epidemics 7, 28-34, 2014
442014
Phylodynamic inference and model assessment with approximate bayesian computation: influenza as a case study
O Ratmann, G Donker, A Meijer, C Fraser, K Koelle
PLoS computational biology 8 (12), e1002835, 2012
442012
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