Saurabh Sinha
Title
Cited by
Cited by
Year
Assessing computational tools for the discovery of transcription factor binding sites
M Tompa, N Li, TL Bailey, GM Church, B De Moor, E Eskin, AV Favorov, ...
Nature biotechnology 23 (1), 137-144, 2005
14772005
Big data: astronomical or genomical?
ZD Stephens, SY Lee, F Faghri, RH Campbell, C Zhai, MJ Efron, R Iyer, ...
PLoS biology 13 (7), e1002195, 2015
9032015
The genome of a songbird
WC Warren, DF Clayton, H Ellegren, AP Arnold, LDW Hillier, A Künstner, ...
Nature 464 (7289), 757-762, 2010
7692010
Functional and evolutionary insights from the genomes of three parasitoid Nasonia species
JH Werren, S Richards, CA Desjardins, O Niehuis, J Gadau, ...
Science 327 (5963), 343, 2010
7312010
Motif module map reveals enforcement of aging by continual NF-κB activity
AS Adler, S Sinha, TLA Kawahara, JY Zhang, E Segal, HY Chang
Genes & development 21 (24), 3244, 2007
4192007
YMF: A program for discovery of novel transcription factor binding sites by statistical overrepresentation
S Sinha, M Tompa
Nucleic acids research 31 (13), 3586-3588, 2003
3052003
Discovery of novel transcription factor binding sites by statistical overrepresentation
S Sinha, M Tompa
Nucleic Acids Research 30 (24), 5549-5560, 2002
2792002
A statistical method for finding transcription factor binding sites
S Sinha, M Tompa
Proc Int Conf Intell Syst Mol Biol 8 (1553-0833), 344-54, 2000
2792000
A probabilistic method to detect regulatory modules
S Sinha, E Van Nimwegen, ED Siggia
Bioinformatics 19 (suppl 1), i292, 2003
2732003
PhyME: a probabilistic algorithm for finding motifs in sets of orthologous sequences
S Sinha, M Blanchette, M Tompa
BMC bioinformatics 5 (1), 170, 2004
2412004
Honey bee aggression supports a link between gene regulation and behavioral evolution
C Alaux, S Sinha, L Hasadsri, GJ Hunt, E Guzmán-Novoa, ...
Proceedings of the National Academy of Sciences 106 (36), 15400-15405, 2009
2342009
Genomic signatures of evolutionary transitions from solitary to group living
KM Kapheim, H Pan, C Li, SL Salzberg, D Puiu, T Magoc, HM Robertson, ...
Science 348 (6239), 1139-1143, 2015
2332015
A graph theoretic approach to software watermarking
R Venkatesan, V Vazirani, S Sinha
Information Hiding, 157-168, 2001
2182001
FlyFactorSurvey: a database of Drosophila transcription factor binding specificities determined using the bacterial one-hybrid system
LJ Zhu, RG Christensen, M Kazemian, CJ Hull, MS Enuameh, ...
Nucleic Acids Research 39 (suppl 1), D111, 2011
1902011
Oblivious hashing: A stealthy software integrity verification primitive
Y Chen, R Venkatesan, M Cary, R Pang, S Sinha, MH Jakubowski
International Workshop on Information Hiding, 400-414, 2002
1862002
A systematic characterization of factors that regulate Drosophila segmentation via a bacterial one-hybrid system
MB Noyes, X Meng, A Wakabayashi, S Sinha, MH Brodsky, SA Wolfe
Nucleic acids research 36 (8), 2547, 2008
1742008
Thermodynamics-based models of transcriptional regulation by enhancers: the roles of synergistic activation, cooperative binding and short-range repression
X He, MAH Samee, C Blatti, S Sinha
PLoS computational biology 6 (9), e1000935, 2010
1652010
A statistical method for alignment-free comparison of regulatory sequences
MR Kantorovitz, GE Robinson, S Sinha
Bioinformatics 23 (13), i249-i255, 2007
1452007
Regulation of brain gene expression in honey bees by brood pheromone
C Alaux, Y Le Conte, HA Adams, S Rodriguez‐Zas, CM Grozinger, ...
Genes, Brain and Behavior 8 (3), 309-319, 2009
1202009
Cross-species comparison significantly improves genome-wide prediction of cis-regulatory modules in Drosophila
S Sinha, M Schroeder, U Unnerstall, U Gaul, E Siggia
BMC bioinformatics 5 (1), 129, 2004
1102004
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Articles 1–20