| Single-cell transcriptomic analysis of cardiac differentiation from human PSCs reveals HOPX-dependent cardiomyocyte maturation CE Friedman, Q Nguyen, SW Lukowski, A Helfer, HS Chiu, J Miklas, ... Cell stem cell 23 (4), 586-598. e8, 2018 | 225 | 2018 |
| A single‐cell transcriptome atlas of the adult human retina SW Lukowski, CY Lo, AA Sharov, Q Nguyen, L Fang, SSC Hung, L Zhu, ... The EMBO journal 38 (18), e100811, 2019 | 201 | 2019 |
| Single-cell eQTL mapping identifies cell type–specific genetic control of autoimmune disease S Yazar, J Alquicira-Hernandez, K Wing, A Senabouth, MG Gordon, ... Science 376 (6589), eabf3041, 2022 | 194 | 2022 |
| Single-cell RNA-seq of human induced pluripotent stem cells reveals cellular heterogeneity and cell state transitions between subpopulations QH Nguyen, SW Lukowski, HS Chiu, A Senabouth, TJC Bruxner, ... Genome research 28 (7), 1053-1066, 2018 | 107 | 2018 |
| Single cell eQTL analysis identifies cell type-specific genetic control of gene expression in fibroblasts and reprogrammed induced pluripotent stem cells D Neavin, Q Nguyen, MS Daniszewski, HH Liang, HS Chiu, YK Wee, ... Genome biology 22, 1-19, 2021 | 67 | 2021 |
| Genotype-free demultiplexing of pooled single-cell RNA-seq J Xu, C Falconer, Q Nguyen, J Crawford, BD McKinnon, S Mortlock, ... Genome biology 20, 1-12, 2019 | 62 | 2019 |
| Genetic variation affects morphological retinal phenotypes extracted from UK Biobank optical coherence tomography images H Currant, P Hysi, TW Fitzgerald, P Gharahkhani, PWM Bonnemaijer, ... PLoS genetics 17 (5), e1009497, 2021 | 56 | 2021 |
| Single cell RNA sequencing of stem cell-derived retinal ganglion cells M Daniszewski, A Senabouth, QH Nguyen, DE Crombie, SW Lukowski, ... Scientific data 5 (1), 1-9, 2018 | 50 | 2018 |
| ascend: R package for analysis of single-cell RNA-seq data A Senabouth, SW Lukowski, JA Hernandez, SB Andersen, X Mei, ... GigaScience 8 (8), giz087, 2019 | 46 | 2019 |
| Comparative performance of the BGI and Illumina sequencing technology for single-cell RNA-sequencing A Senabouth, S Andersen, Q Shi, L Shi, F Jiang, W Zhang, K Wing, ... NAR genomics and bioinformatics 2 (2), lqaa034, 2020 | 41 | 2020 |
| Transcriptomic and proteomic retinal pigment epithelium signatures of age-related macular degeneration A Senabouth, M Daniszewski, GE Lidgerwood, HH Liang, D Hernández, ... Nature Communications 13 (1), 4233, 2022 | 33 | 2022 |
| Transcriptomic profiling of human pluripotent stem cell-derived retinal pigment epithelium over time GE Lidgerwood, A Senabouth, CJA Smith-Anttila, ... Genomics, Proteomics and Bioinformatics 19 (2), 223-242, 2021 | 27 | 2021 |
| Single-cell profiling identifies key pathways expressed by iPSCs cultured in different commercial media M Daniszewski, Q Nguyen, HS Chy, V Singh, DE Crombie, T Kulkarni, ... Iscience 7, 30-39, 2018 | 20 | 2018 |
| Detection of HPV E7 transcription at single-cell resolution in epidermis SW Lukowski, ZK Tuong, K Noske, A Senabouth, QH Nguyen, ... Journal of Investigative Dermatology 138 (12), 2558-2567, 2018 | 18 | 2018 |
| Longitudinal expression profiling of CD4+ and CD8+ cells in patients with active to quiescent giant cell arteritis E De Smit, SW Lukowski, L Anderson, A Senabouth, K Dauyey, S Song, ... BMC Medical Genomics 11, 1-16, 2018 | 17 | 2018 |
| The relationship between adrenocortical candidate gene expression and clinical response to hydrocortisone in patients with septic shock J Cohen, A Blumenthal, G Cuellar-Partida, DM Evans, S Finfer, Q Li, ... Intensive Care Medicine 47 (9), 974-983, 2021 | 15 | 2021 |
| Demuxafy: improvement in droplet assignment by integrating multiple single-cell demultiplexing and doublet detection methods D Neavin, A Senabouth, H Arora, JTH Lee, A Ripoll-Cladellas, ... Genome Biology 25 (1), 94, 2024 | 11 | 2024 |
| Retinal ganglion cell-specific genetic regulation in primary open-angle glaucoma M Daniszewski, A Senabouth, HH Liang, X Han, GE Lidgerwood, ... Cell Genomics 2 (6), 2022 | 9 | 2022 |
| Generation of human neural retina transcriptome atlas by single cell RNA sequencing SW Lukowski, CY Lo, A Sharov, QH Nguyen, L Fang, SSC Hung, L Zhu, ... bioRxiv, 425223, 2018 | 8 | 2018 |
| Single‐cell analysis of lymphatic endothelial cell fate specification and differentiation during zebrafish development L Grimm, E Mason, H Yu, S Dudczig, V Panara, T Chen, NI Bower, ... The EMBO Journal 42 (11), e112590, 2023 | 7 | 2023 |
