John van der Oost

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Willem M de VosProfessor @ Microbiology Wageningen Netherlands @Helsinki FinlandVerified email at wur.nl
Stan J.J. BrounsProfessor of Molecular Microbiology, Delft University of TechnologyVerified email at tudelft.nl
S.W.M. KengenAssistant professor Wageningen UniversityVerified email at wur.nl
Eugene KooninSenior Investigator, NCBI, NIHVerified email at ncbi.nlm.nih.gov
Edze WestraProfessor of Microbiology, University of Exeter, Biosciences, ESIVerified email at exeter.ac.uk
Kira MakarovaNCBI, NIHVerified email at ncbi.nlm.nih.gov
Hauke SmidtPersonal Chair Complex Microbial Ecosystems, Wageningen University & ResearchVerified email at wur.nl
Snijders apThe Francis Crick InstituteVerified email at crick.ac.uk
Raymond StaalsAssociate Professor, Wageningen UniversityVerified email at wur.nl
Prarthana MohanrajuWageningen University & ResearchVerified email at wur.nl
Daan C. SwartsAssistant Professor/Personal Investigator | Wageningen University & ResearchVerified email at wur.nl
Richard van KranenburgCorbionVerified email at corbion.com
Nico J. ClaassensAssistant Professor at Wageningen UniversityVerified email at wur.nl
Mark LevissonWageningen UniversityVerified email at wur.nl
Rodolphe BarrangouNorth Carolina State UniversityVerified email at ncsu.edu
Mark J DickmanProfessor of Bioanalytical Science and Engineering, Dept of Chemical and Biological EngineeringVerified email at sheffield.ac.uk
Rob van SpanningAssistant Professor Molecular Cell Biology, Vrije Universiteit AmsterdamVerified email at vu.nl
Thijs J. G. EttemaLaboratory of Microbiology, Wageningen University, The NetherlandsVerified email at wur.nl
Albert J. R. HeckBiomolecular Mass Spectrometry and Proteomics, Bijvoet Center and Utrecht UniversityVerified email at uu.nl
Omar O. AbudayyehMcGovern Fellow, MITVerified email at mit.edu

John van der Oost

Microbiology, Wageningen University

Verified email at wur.nl - Homepage

microbiology CRISPR Argonaute biosensor


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Cpf1 is a single RNA-guided endonuclease of a class 2 CRISPR-Cas system B Zetsche, JS Gootenberg, OO Abudayyeh, IM Slaymaker, KS Makarova, ... Cell 163 (3), 759-771, 2015	4016	2015
Small CRISPR RNAs guide antiviral defense in prokaryotes SJJ Brouns, MM Jore, M Lundgren, ER Westra, RJH Slijkhuis, ... Science 321 (5891), 960-964, 2008	3110	2008
Evolution and classification of the CRISPR–Cas systems KS Makarova, DH Haft, R Barrangou, SJJ Brouns, E Charpentier, ... Nature Reviews Microbiology 9 (6), 467-477, 2011	3033	2011
An updated evolutionary classification of CRISPR–Cas systems KS Makarova, YI Wolf, OS Alkhnbashi, F Costa, SA Shah, SJ Saunders, ... Nature Reviews Microbiology 13 (11), 722-736, 2015	2480	2015
Crystal structure of an ACh-binding protein reveals the ligand-binding domain of nicotinic receptors KS Brejc, WJ van Dijk, RV Klaassen, M Schuurmans, J Van der Oost, ... Nature 411 (6835), 269-276, 2001	2206	2001
Evolutionary classification of CRISPR–Cas systems: a burst of class 2 and derived variants KS Makarova, YI Wolf, J Iranzo, SA Shmakov, OS Alkhnbashi, SJJ Brouns, ... Nature Reviews Microbiology 18 (2), 67-83, 2020	1258	2020
The complete genome of the crenarchaeon Sulfolobus solfataricus P2 Q She, RK Singh, F Confalonieri, Y Zivanovic, G Allard, MJ Awayez, ... Proceedings of the National Academy of Sciences 98 (14), 7835-7840, 2001	951	2001
Interference by clustered regularly interspaced short palindromic repeat (CRISPR) RNA is governed by a seed sequence E Semenova, MM Jore, KA Datsenko, A Semenova, ER Westra, B Wanner, ... Proceedings of the National Academy of Sciences 108 (25), 10098-10103, 2011	946	2011
Multiplex gene editing by CRISPR–Cpf1 using a single crRNA array B Zetsche, M Heidenreich, P Mohanraju, I Fedorova, J Kneppers, ... Nature Biotechnology 35 (1), 31-34, 2017	801	2017
Unravelling the structural and mechanistic basis of CRISPR–Cas systems J Van der Oost, ER Westra, RN Jackson, B Wiedenheft Nature Reviews Microbiology 12 (7), 479-492, 2014	781	2014
CRISPR immunity relies on the consecutive binding and degradation of negatively supercoiled invader DNA by Cascade and Cas3 ER Westra, PBG van Erp, T Künne, SP Wong, RHJ Staals, CLC Seegers, ... Molecular Cell 46 (5), 595-605, 2012	694	2012
CRISPR-based adaptive and heritable immunity in prokaryotes J Van der Oost, MM Jore, ER Westra, M Lundgren, SJJ Brouns Trends in Biochemical Sciences 34 (8), 401-407, 2009	659	2009
Structural basis for CRISPR RNA-guided DNA recognition by Cascade MM Jore, M Lundgren, E Van Duijn, JB Bultema, ER Westra, ... Nature structural & molecular biology 18 (5), 529-536, 2011	653	2011
Codon bias as a means to fine-tune gene expression. T Quax, N Claassens, D Söll, J Van der Oost Molecular Cell 59, 149-161, 2015	629	2015
Diverse evolutionary roots and mechanistic variations of the CRISPR-Cas systems P Mohanraju, KS Makarova, B Zetsche, F Zhang, EV Koonin, ... Science 353 (6299), aad5147, 2016	619	2016
Structures of the RNA-guided surveillance complex from a bacterial immune system B Wiedenheft, GC Lander, K Zhou, MM Jore, SJJ Brouns, J Van der Oost, ... Nature 477 (7365), 486-489, 2011	551	2011
Pathogen-induced activation of disease-suppressive functions in the endophytic root microbiome VJ Carrión, J Perez-Jaramillo, V Cordovez, V Tracanna, M De Hollander, ... Science 366 (6465), 606-612, 2019	502	2019
Healthy human gut phageome P Manrique, B Bolduc, ST Walk, J van der Oost, WM de Vos, MJ Young Proceedings of the National Academy of Sciences 113 (37), 10400-10405, 2016	460	2016
DNA-guided DNA interference by a prokaryotic Argonaute DC Swarts, MM Jore, ER Westra, Y Zhu, JH Janssen, AP Snijders, ... Nature 507 (7491), 258-261, 2014	398	2014
Structural basis for guide RNA processing and seed-dependent DNA targeting by CRISPR-Cas12a DC Swarts, J van der Oost, M Jinek Molecular cell 66 (2), 221-233. e4, 2017	396	2017

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