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Shira Weingarten-Gabbay
Shira Weingarten-Gabbay
Postdoctoral Fellow, Harvard University and The Broad Institute of MIT and Harvard
Geverifieerd e-mailadres voor broadinstitute.org
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The coding capacity of SARS-CoV-2
Y Finkel, O Mizrahi, A Nachshon, S Weingarten-Gabbay, D Morgenstern, ...
Nature 589 (7840), 125-130, 2021
5742021
Systematic discovery of cap-independent translation sequences in human and viral genomes
S Weingarten-Gabbay, S Elias-Kirma, R Nir, AA Gritsenko, ...
Science 351 (6270), aad4939, 2016
3552016
Structured elements drive extensive circular RNA translation
CK Chen, R Cheng, J Demeter, J Chen, S Weingarten-Gabbay, L Jiang, ...
Molecular cell 81 (20), 4300-4318. e13, 2021
1322021
The grammar of transcriptional regulation
S Weingarten-Gabbay, E Segal
Human genetics 133, 701-711, 2014
1192014
Profiling SARS-CoV-2 HLA-I peptidome reveals T cell epitopes from out-of-frame ORFs
S Weingarten-Gabbay, S Klaeger, S Sarkizova, LR Pearlman, DY Chen, ...
Cell 184 (15), 3962-3980. e17, 2021
1072021
Systematic interrogation of human promoters
S Weingarten-Gabbay, R Nir, S Lubliner, E Sharon, Y Kalma, ...
Genome research 29 (2), 171-183, 2019
942019
Noise in gene expression is coupled to growth rate
L Keren, D Van Dijk, S Weingarten-Gabbay, D Davidi, G Jona, ...
Genome research 25 (12), 1893-1902, 2015
912015
The translation initiation factor DAP5 promotes IRES-driven translation of p53 mRNA
S Weingarten-Gabbay, D Khan, N Liberman, Y Yoffe, S Bialik, S Das, ...
Oncogene 33 (5), 611-618, 2014
872014
Unraveling the determinants of microRNA mediated regulation using a massively parallel reporter assay
I Vainberg Slutskin, S Weingarten-Gabbay, R Nir, A Weinberger, E Segal
Nature Communications 9 (1), 529, 2018
452018
Sequence features of viral and human Internal Ribosome Entry Sites predictive of their activity
AA Gritsenko, S Weingarten-Gabbay, S Elias-Kirma, R Nir, D De Ridder, ...
PLoS Computational Biology 13 (9), e1005734, 2017
322017
SARS-CoV-2 infected cells present HLA-I peptides from canonical and out-of-frame ORFs
S Weingarten-Gabbay, S Klaeger, S Sarkizova, LR Pearlman, DY Chen, ...
bioRxiv, 2020.10. 02.324145, 2020
242020
A shared architecture for promoters and enhancers
S Weingarten-Gabbay, E Segal
Nature genetics 46 (12), 1253-1254, 2014
202014
DAP5 drives translation of specific mRNA targets with upstream ORFs in human embryonic stem cells
M David, T Olender, O Mizrahi, S Weingarten-Gabbay, G Friedlander, ...
Rna 28 (10), 1325-1336, 2022
142022
MS-based HLA-II peptidomics combined with multiomics will aid the development of future immunotherapies
HB Taylor, S Klaeger, KR Clauser, S Sarkizova, S Weingarten-Gabbay, ...
Molecular & Cellular Proteomics 20, 2021
142021
Toward a systematic understanding of translational regulatory elements in human and viruses
S Weingarten-Gabbay, E Segal
RNA biology 13 (10), 927-933, 2016
92016
The HLA-II immunopeptidome of SARS-CoV-2
S Weingarten-Gabbay, DY Chen, S Sarkizova, HB Taylor, M Gentili, ...
Cell reports 43 (1), 2024
72024
Deciphering transcriptional regulation of human core promoters
S Weingarten-Gabbay, R Nir, S Lubliner, E Sharon, Y Kalma, ...
bioRxiv, 174904, 2017
32017
HLA-I immunopeptidome profiling of human cells infected with high-containment enveloped viruses
S Weingarten-Gabbay, LR Pearlman, DY Chen, S Klaeger, HB Taylor, ...
STAR protocols 3 (4), 101910, 2022
22022
The coding capacity of SARS-CoV-2 (preprint)
Y Finkel, O Mizrahi, A Nachshon, S Weingarten-Gabbay, D Morgenstern, ...
12020
Functional analysis of the AUG initiator codon context reveals novel conserved sequences that disfavor mRNA translation in eukaryotes
G Hernández, A García, S Weingarten-Gabbay, RK Mishra, T Hussain, ...
Nucleic Acids Research 52 (3), 1064-1079, 2024
2024
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Artikelen 1–20