| Genomic analysis of globally diverse Mycobacterium tuberculosis strains provides insights into the emergence and spread of multidrug resistance AL Manson, KA Cohen, T Abeel, CA Desjardins, DT Armstrong, ... Nature genetics 49 (3), 395, 2017 | 94 | 2017 |
| Genomic and functional analyses of Mycobacterium tuberculosis strains implicate ald in D-cycloserine resistance CA Desjardins, KA Cohen, V Munsamy, T Abeel, K Maharaj, BJ Walker, ... Nature genetics 48 (5), 544, 2016 | 89 | 2016 |
| Nanopore sequencing enables near-complete de novo assembly of Saccharomyces cerevisiae reference strain CEN. PK113-7D AN Salazar, AR Gorter de Vries, M van den Broek, M Wijsman, ... FEMS yeast research 17 (7), 2017 | 34 | 2017 |
| Mycobacterium tuberculosis whole genome sequences from Southern India suggest novel resistance mechanisms and the need for region-specific diagnostics AL Manson, T Abeel, JE Galagan, JC Sundaramurthi, A Salazar, ... Clinical Infectious Diseases 64 (11), 1494-1501, 2017 | 28 | 2017 |
| Laboratory Evolution of a Saccharomyces cerevisiae× S. eubayanus Hybrid Under Simulated Lager-Brewing Conditions AR Gorter de Vries, MA Voskamp, ACA van Aalst, LH Kristensen, ... Frontiers in genetics 10, 242, 2019 | 6 | 2019 |
| Normalizing alternate representations of large sequence variants across multiple bacterial genomes A Salazar, A Earl, C Desjardins, T Abeel BMC bioinformatics 16 (2), A8, 2015 | 5 | 2015 |
| Nanopore sequencing and comparative genome analysis confirm lager-brewing yeasts originated from a single hybridization AN Salazar, AG de Vries, M van den Broek, N Brouwers, ... bioRxiv, 603480, 2019 | 2 | 2019 |
| Approximate, simultaneous comparison of microbial genome architectures via syntenic anchoring of quiver representations AN Salazar, T Abeel Bioinformatics 34 (17), i732-i742, 2018 | 1 | 2018 |
| Chromosome level assembly and comparative genome analysis confirm lager-brewing yeasts originated from a single hybridization AN Salazar, ARG de Vries, M van den Broek, N Brouwers, ... BMC genomics 20 (1), 1-18, 2019 | | 2019 |
| Alpaca: a kmer-based approach for investigating mosaic structures in microbial genomes A Salazar, T Abeel BioRxiv, 551234, 2019 | | 2019 |
