| Genomic analysis of globally diverse Mycobacterium tuberculosis strains provides insights into the emergence and spread of multidrug resistance AL Manson, KA Cohen, T Abeel, CA Desjardins, DT Armstrong, ... Nature genetics 49 (3), 395-402, 2017 | 306 | 2017 |
| Genomic and functional analyses of Mycobacterium tuberculosis strains implicate ald in D-cycloserine resistance CA Desjardins, KA Cohen, V Munsamy, T Abeel, K Maharaj, BJ Walker, ... Nature genetics 48 (5), 544-551, 2016 | 197 | 2016 |
| Nanopore sequencing enables near-complete de novo assembly of Saccharomyces cerevisiae reference strain CEN.PK113-7D AN Salazar, AR Gorter de Vries, M van den Broek, M Wijsman, ... FEMS Yeast Research 17 (7), fox074, 2017 | 101 | 2017 |
| Engineered phage with antibacterial CRISPR–Cas selectively reduce E. coli burden in mice YE Gencay, D Jasinskytė, C Robert, S Semsey, V Martínez, AØ Petersen, ... Nature Biotechnology 42 (2), 265-274, 2024 | 70 | 2024 |
| Mycobacterium tuberculosis whole genome sequences from Southern India suggest novel resistance mechanisms and the need for region-specific diagnostics AL Manson, T Abeel, JE Galagan, JC Sundaramurthi, A Salazar, ... Clinical Infectious Diseases 64 (11), 1494-1501, 2017 | 69 | 2017 |
| Chromosome level assembly and comparative genome analysis confirm lager-brewing yeasts originated from a single hybridization AN Salazar, AR Gorter de Vries, M Van Den Broek, N Brouwers, ... BMC genomics 20, 1-18, 2019 | 56 | 2019 |
| Laboratory Evolution of a Saccharomyces cerevisiae × S. eubayanus Hybrid Under Simulated Lager-Brewing Conditions AR Gorter de Vries, MA Voskamp, ACA Van Aalst, LH Kristensen, ... Frontiers in Genetics 10, 242, 2019 | 47 | 2019 |
| An educational guide for nanopore sequencing in the classroom AN Salazar, FL Nobrega, C Anyansi, C Aparicio-Maldonado, AR Costa, ... PLoS computational biology 16 (1), e1007314, 2020 | 24 | 2020 |
| Approximate, simultaneous comparison of microbial genome architectures via syntenic anchoring of quiver representations AN Salazar, T Abeel Bioinformatics 34 (17), i732-i742, 2018 | 11 | 2018 |
| Salazar, C C Salazar | 8 | 2015 |
| Nanopore sequencing and comparative genome analysis confirm lager-brewing yeasts originated from a single hybridization AN Salazar, AR Gorter de Vries, M van den Broek, N Brouwers, ... bioRxiv, 603480, 2019 | 7 | 2019 |
| An AluYb8 retrotransposon characterises a risk haplotype of TMEM106B associated in neurodegeneration A Salazar, N Tesi, L Knoop, Y Pijnenburg, S van der Lee, S Wijesekera, ... medRxiv, 2023.07. 16.23292721, 2023 | 4 | 2023 |
| Normalizing alternate representations of large sequence variants across multiple bacterial genomes A Salazar, A Earl, C Desjardins, T Abeel BMC Bioinformatics 16 (Suppl 2), A8, 2015 | 4 | 2015 |
| Characterizing tandem repeat complexities across long-read sequencing platforms with TREAT and otter N Tesi, A Salazar, Y Zhang, S van der Lee, M Hulsman, L Knoop, ... Genome Research 34 (11), 1942-1953, 2024 | 3 | 2024 |
| An AluYb8 mobile element further characterises a risk haplotype of TMEM106B associated in neurodegeneration A Salazar, N Tesi, M Hulsman, L Knoop, S Van Der Lee, S Wijesekera, ... | 3 | 2023 |
| Alpaca: a kmer-based approach for investigating mosaic structures in microbial genomes AN Salazar, T Abeel bioRxiv, 551234, 2019 | 3 | 2019 |
| MotifScope: a multi-sample motif discovery and visualization tool for tandem repeats Y Zhang, M Hulsman, A Salazar, N Tesi, L Knoop, S van der Lee, ... bioRxiv, 2024.03. 06.583591, 2024 | 2 | 2024 |
| Whole-Genome Sequencing of 11 High-Risk Clone ST111 Pseudomonas aeruginosa Isolates from French Hospitals M Anbo, MAT Chichkova, YE Gençay, A Salazar, K Jeannot, L Jelsbak Microbiology Resource Announcements 12 (7), e00091-23, 2023 | 2 | 2023 |
| Exploring nanopore direct sequencing performance of forensic STRs, SNPs, InDels, and DNA methylation markers in a single assay DDSH de Bruin, MA Haagmans, KJ van der Gaag, J Hoogenboom, ... Forensic Science International: Genetics 74, 103154, 2025 | | 2025 |
| Multisample motif discovery and visualization for tandem repeats Y Zhang, M Hulsman, A Salazar, N Tesi, L Knoop, S van der Lee, ... Genome Research, gr. 279278.124, 2024 | | 2024 |
