Tao Xie
Tao Xie
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Integrated systems approach identifies genetic nodes and networks in late-onset Alzheimer’s disease
B Zhang, C Gaiteri, LG Bodea, Z Wang, J McElwee, AA Podtelezhnikov, ...
Cell 153 (3), 707-720, 2013
12082013
Whole-genome sequencing and comprehensive molecular profiling identify new driver mutations in gastric cancer
K Wang, ST Yuen, J Xu, SP Lee, HHN Yan, ST Shi, HC Siu, S Deng, ...
Nature genetics 46 (6), 573-582, 2014
7822014
Validation of candidate causal genes for obesity that affect shared metabolic pathways and networks
X Yang, JL Deignan, H Qi, J Zhu, S Qian, J Zhong, G Torosyan, S Majid, ...
Nature genetics 41 (4), 415-423, 2009
2862009
Differential gene expression profiling of adult murine hematopoietic stem cells
IK Park, Y He, F Lin, OD Laerum, Q Tian, R Bumgarner, CA Klug, K Li, ...
Blood, The Journal of the American Society of Hematology 99 (2), 488-498, 2002
2272002
Identification of a poor-prognosis BRAF-mutant-like population of patients with colon cancer
V Popovici, E Budinska, S Tejpar, S Weinrich, H Estrella, G Hodgson, ...
J Clin Oncol 30 (12), 1288-1295, 2012
2232012
The relationship between synonymous codon usage and protein structure
X Tao, D Dafu
FEBS letters 434 (1-2), 93-96, 1998
1621998
Genomic landscape of copy number aberrations enables the identification of oncogenic drivers in hepatocellular carcinoma
K Wang, HY Lim, S Shi, J Lee, S Deng, T Xie, Z Zhu, Y Wang, D Pocalyko, ...
Hepatology 58 (2), 706-717, 2013
1482013
Common dysregulation network in the human prefrontal cortex underlies two neurodegenerative diseases
M Narayanan, JL Huynh, K Wang, X Yang, S Yoo, J McElwee, B Zhang, ...
Molecular systems biology 10 (7), 743, 2014
1082014
A comprehensive characterization of genome-wide copy number aberrations in colorectal cancer reveals novel oncogenes and patterns of alterations
T Xie, G d’Ario, JR Lamb, E Martin, K Wang, S Tejpar, M Delorenzi, ...
Public Library of Science 7 (7), e42001, 2012
782012
Patterns of somatic alterations between matched primary and metastatic colorectal tumors characterized by whole-genome sequencing
T Xie, YB Cho, K Wang, D Huang, HK Hong, YL Choi, YH Ko, DH Nam, ...
Genomics 104 (4), 234-241, 2014
582014
Inferring causal genomic alterations in breast cancer using gene expression data
LM Tran, B Zhang, Z Zhang, C Zhang, T Xie, JR Lamb, H Dai, EE Schadt, ...
BMC systems biology 5 (1), 1-13, 2011
542011
Cis-regulatory variations: a study of SNPs around genes showing cis-linkage in segregating mouse populations
D GuhaThakurta, T Xie, M Anand, SW Edwards, G Li, SS Wang, ...
BMC genomics 7 (1), 1-18, 2006
542006
Predictive genes in adjacent normal tissue are preferentially altered by sCNV during tumorigenesis in liver cancer and may rate limiting
JR Lamb, C Zhang, T Xie, K Wang, B Zhang, K Hao, E Chudin, HB Fraser, ...
PloS one 6 (7), e20090, 2011
532011
DNA copy number, including telomeres and mitochondria, assayed using next-generation sequencing
JC Castle, M Biery, H Bouzek, T Xie, R Chen, K Misura, S Jackson, ...
BMC genomics 11 (1), 1-11, 2010
492010
CDK4/6 inhibitors impair recovery from cytotoxic chemotherapy in pancreatic adenocarcinoma
B Salvador-Barbero, M Álvarez-Fernández, E Zapatero-Solana, ...
Cancer Cell 37 (3), 340-353. e6, 2020
402020
Test of four colon cancer risk-scores in formalin fixed paraffin embedded microarray gene expression data
AF Di Narzo, S Tejpar, S Rossi, P Yan, V Popovici, P Wirapati, E Budinska, ...
JNCI: Journal of the National Cancer Institute 106 (10), 2014
392014
Development of a colon cancer GEMM-derived orthotopic transplant model for drug discovery and validation
ES Martin, PJ Belmont, MJ Sinnamon, LG Richard, J Yuan, EM Coffee, ...
Clinical Cancer Research 19 (11), 2929-2940, 2013
322013
Resistance to dual blockade of the kinases PI3K and mTOR in KRAS-mutant colorectal cancer models results in combined sensitivity to inhibition of the receptor tyrosine kinase EGFR
PJ Belmont, P Jiang, TD McKee, T Xie, J Isaacson, NE Baryla, J Roper, ...
Science signaling 7 (351), ra107-ra107, 2014
252014
TNER: a novel background error suppression method for mutation detection in circulating tumor DNA
S Deng, M Lira, D Huang, K Wang, C Valdez, J Kinong, PA Rejto, ...
BMC bioinformatics 19 (1), 1-7, 2018
242018
Whole exome sequencing of rapid autopsy tumors and xenograft models reveals possible driver mutations underlying tumor progression
T Xie, M Musteanu, PP Lopez-Casas, DJ Shields, P Olson, PA Rejto, ...
PloS one 10 (11), e0142631, 2015
232015
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