| Phylogeny. fr: robust phylogenetic analysis for the non-specialist A Dereeper, V Guignon, G Blanc, S Audic, S Buffet, F Chevenet, ... Nucleic acids research 36 (suppl_2), W465-W469, 2008 | 5330 | 2008 |
| BLAST-EXPLORER helps you building datasets for phylogenetic analysis A Dereeper, S Audic, JM Claverie, G Blanc BMC evolutionary biology 10, 1-6, 2010 | 877 | 2010 |
| The coffee genome provides insight into the convergent evolution of caffeine biosynthesis F Denoeud, L Carretero-Paulet, A Dereeper, G Droc, R Guyot, M Pietrella, ... science 345 (6201), 1181-1184, 2014 | 638 | 2014 |
| The banana genome hub G Droc, D Lariviere, V Guignon, N Yahiaoui, D This, O Garsmeur, ... Database 2013, bat035, 2013 | 176 | 2013 |
| Transposable elements are a major cause of somatic polymorphism in Vitis vinifera L. G Carrier, L Le Cunff, A Dereeper, D Legrand, F Sabot, O Bouchez, ... PloS one 7 (3), e32973, 2012 | 115 | 2012 |
| An improved method for TAL effectors DNA-binding sites prediction reveals functional convergence in TAL repertoires of Xanthomonas oryzae strains AL Pérez-Quintero, LM Rodriguez-R, A Dereeper, C López, R Koebnik, ... PloS one 8 (7), e68464, 2013 | 97 | 2013 |
| Genetic diversity, linkage disequilibrium and power of a large grapevine (Vitis vinifera L) diversity panel newly designed for association studies SD Nicolas, JP Péros, T Lacombe, A Launay, MC Le Paslier, A Bérard, ... BMC plant biology 16, 1-19, 2016 | 94 | 2016 |
| Contribution of subgenomes to the transcriptome and their intertwined regulation in the allopolyploid Coffea arabica grown at contrasted temperatures MC Combes, A Dereeper, D Severac, B Bertrand, P Lashermes New phytologist 200 (1), 251-260, 2013 | 93 | 2013 |
| SNiPlay: a web-based tool for detection, management and analysis of SNPs. Application to grapevine diversity projects A Dereeper, S Nicolas, L Le Cunff, R Bacilieri, A Doligez, JP Peros, ... BMC bioinformatics 12, 1-14, 2011 | 87 | 2011 |
| Regulatory divergence between parental alleles determines gene expression patterns in hybrids MC Combes, Y Hueber, A Dereeper, S Rialle, JC Herrera, P Lashermes Genome biology and evolution 7 (4), 1110-1121, 2015 | 81 | 2015 |
| The coffee genome hub: a resource for coffee genomes A Dereeper, S Bocs, M Rouard, V Guignon, S Ravel, ... Nucleic acids research 43 (D1), D1028-D1035, 2015 | 75 | 2015 |
| Dual RNA‐seq reveals Meloidogyne graminicola transcriptome and candidate effectors during the interaction with rice plants AS Petitot, A Dereeper, M Agbessi, C Da Silva, J Guy, M Ardisson, ... Molecular Plant Pathology 17 (6), 860-874, 2016 | 64 | 2016 |
| Transcriptomic and histological responses of African rice (Oryza glaberrima) to Meloidogyne graminicola provide new insights into root-knot nematode resistance … AS Petitot, T Kyndt, R Haidar, A Dereeper, M Collin, J de Almeida Engler, ... Annals of Botany 119 (5), 885-899, 2017 | 63 | 2017 |
| SNiPlay3: a web-based application for exploration and large scale analyses of genomic variations A Dereeper, F Homa, G Andres, G Sempere, G Sarah, Y Hueber, ... Nucleic Acids Research 43 (W1), W295-W300, 2015 | 51 | 2015 |
| Genome rearrangements derived from homoeologous recombination following allopolyploidy speciation in coffee P Lashermes, MC Combes, Y Hueber, D Severac, A Dereeper The Plant Journal 78 (4), 674-685, 2014 | 51 | 2014 |
| Deep sequencing reveals differences in the transcriptional landscapes of fibers from two cultivated species of cotton JM Lacape, M Claverie, RO Vidal, MF Carazzolle, GA Guimaraes Pereira, ... PloS one 7 (11), e48855, 2012 | 50 | 2012 |
| Genetics of nodulation in Aeschynomene evenia uncovers mechanisms of the rhizobium–legume symbiosis J Quilbé, L Lamy, L Brottier, P Leleux, J Fardoux, R Rivallan, T Benichou, ... Nature Communications 12 (1), 829, 2021 | 43 | 2021 |
| Allelic variation for broad‐spectrum resistance and susceptibility to bacterial pathogens identified in a rice MAGIC population AM Bossa‐Castro, C Tekete, C Raghavan, EE Delorean, A Dereeper, ... Plant biotechnology journal 16 (9), 1559-1568, 2018 | 42 | 2018 |
| SAT, a flexible and optimized Web application for SSR marker development A Dereeper, X Argout, C Billot, JF Rami, M Ruiz BMC bioinformatics 8, 1-10, 2007 | 41 | 2007 |
| The Greater Phenotypic Homeostasis of the Allopolyploid Coffea arabica Improved the Transcriptional Homeostasis Over that of Both Diploid Parents B Bertrand, A Bardil, H Baraille, S Dussert, S Doulbeau, E Dubois, ... Plant and Cell Physiology 56 (10), 2035-2051, 2015 | 38 | 2015 |
