An atlas of alternative polyadenylation quantitative trait loci contributing to complex trait and disease heritability L Li, KL Huang, Y Gao, Y Cui, G Wang, ND Elrod, Y Li, YE Chen, P Ji, ... Nature genetics 53 (7), 994-1005, 2021 | 106 | 2021 |
The concurrence of DNA methylation and demethylation is associated with transcription regulation J Shi, J Xu, YE Chen, JS Li, Y Cui, L Shen, JJ Li, W Li Nature communications 12 (1), 5285, 2021 | 40 | 2021 |
DORGE: Discovery of Oncogenes and tumoR suppressor genes using Genetic and Epigenetic features J Lyu, JJ Li, J Su, F Peng, YE Chen, X Ge, W Li Science advances 6 (46), eaba6784, 2020 | 37 | 2020 |
Clipper: p-value-free FDR control on high-throughput data from two conditions X Ge, YE Chen, D Song, ML McDermott, K Woyshner, A Manousopoulou, ... Genome biology 22, 1-29, 2021 | 36 | 2021 |
TROM: A testing-based method for finding transcriptomic similarity of biological samples WV Li, Y Chen, JJ Li Statistics in biosciences 9, 105-136, 2017 | 23 | 2017 |
A flexible model-free prediction-based framework for feature ranking JJ Li, YE Chen, X Tong Journal of Machine Learning Research 22 (124), 1-54, 2021 | 5 | 2021 |
Information-theoretic classification accuracy: a criterion that guides data-driven combination of ambiguous outcome labels in multi-class classification C Zhang, YE Chen, S Zhang, JJ Li Journal of machine learning research 23 (341), 1-65, 2022 | 3 | 2022 |
APIR: Aggregating Universal Proteomics Database Search Algorithms for Peptide Identification with FDR Control YE Chen, X Ge, K Woyshner, ML McDermott, A Manousopoulou, ... bioRxiv, 2021.09. 08.459494, 2021 | | 2021 |
Neyman-Pearson Criterion (NPC): A Model Selection Criterion for Asymmetric Binary Classification JJ Li | | |