Marnix Medema
Marnix Medema
Assistant Professor at Wageningen University
Geverifieerd e-mailadres voor wur.nl - Homepage
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antiSMASH 3.0—a comprehensive resource for the genome mining of biosynthetic gene clusters
T Weber, K Blin, S Duddela, D Krug, HU Kim, R Bruccoleri, SY Lee, ...
Nucleic acids research 43 (W1), W237-W243, 2015
16552015
antiSMASH: rapid identification, annotation and analysis of secondary metabolite biosynthesis gene clusters in bacterial and fungal genome sequences
MH Medema, K Blin, P Cimermancic, V de Jager, P Zakrzewski, ...
Nucleic Acids Research 39 (suppl 2), W339, 2011
12602011
antiSMASH 5.0: updates to the secondary metabolite genome mining pipeline
K Blin, S Shaw, K Steinke, R Villebro, N Ziemert, SY Lee, MH Medema, ...
Nucleic acids research 47 (W1), W81-W87, 2019
9502019
antiSMASH 4.0—improvements in chemistry prediction and gene cluster boundary identification
K Blin, T Wolf, MG Chevrette, X Lu, CJ Schwalen, SA Kautsar, ...
Nucleic acids research 45 (W1), W36-W41, 2017
8572017
antiSMASH 2.0—a versatile platform for genome mining of secondary metabolite producers
K Blin, MH Medema, D Kazempour, MA Fischbach, R Breitling, E Takano, ...
Nucleic acids research 41 (W1), W204-W212, 2013
8112013
Insights into secondary metabolism from a global analysis of prokaryotic biosynthetic gene clusters
P Cimermancic, MH Medema, J Claesen, K Kurita, LCW Brown, ...
Cell 158 (2), 412-421, 2014
5852014
NRPSpredictor2—a web server for predicting NRPS adenylation domain specificity
M Röttig, MH Medema, K Blin, T Weber, C Rausch, O Kohlbacher
Nucleic Acids Research 39 (suppl 2), W362, 2011
5332011
Minimum information about a biosynthetic gene cluster
MH Medema, R Kottmann, P Yilmaz, M Cummings, JB Biggins, K Blin, ...
Nature chemical biology 11 (9), 625-631, 2015
4992015
Structure and function of the global topsoil microbiome
M Bahram, F Hildebrand, SK Forslund, JL Anderson, NA Soudzilovskaia, ...
Nature 560 (7717), 233-237, 2018
4572018
Denitrifying bacteria anaerobically oxidize methane in the absence of Archaea
KF Ettwig, S Shima, KT Van De Pas‐Schoonen, J Kahnt, MH Medema, ...
Environmental microbiology 10 (11), 3164-3173, 2008
4142008
Computational approaches to natural product discovery
MH Medema, MA Fischbach
Nature chemical biology 11 (9), 639, 2015
2862015
Detecting sequence homology at the gene cluster level with MultiGeneBlast
MH Medema, E Takano, R Breitling
Molecular biology and evolution 30 (5), 1218-1223, 2013
2432013
Computational tools for the synthetic design of biochemical pathways
MH Medema, R Van Raaphorst, E Takano, R Breitling
Nature Reviews Microbiology 10 (3), 191-202, 2012
2212012
MS/MS networking guided analysis of molecule and gene cluster families
DD Nguyen, CH Wu, WJ Moree, A Lamsa, MH Medema, X Zhao, ...
Proceedings of the National Academy of Sciences 110 (28), E2611-E2620, 2013
2162013
The sequence of a 1.8-Mb bacterial linear plasmid reveals a rich evolutionary reservoir of secondary metabolic pathways
MH Medema, A Trefzer, A Kovalchuk, M van den Berg, U Müller, W Heijne, ...
Genome biology and evolution 2, 212, 2010
1912010
Exploiting plug-and-play synthetic biology for drug discovery and production in microorganisms
MH Medema, R Breitling, R Bovenberg, E Takano
Nature Reviews Microbiology 9 (2), 131-137, 2011
1842011
The antiSMASH database, a comprehensive database of microbial secondary metabolite biosynthetic gene clusters
K Blin, MH Medema, R Kottmann, SY Lee, T Weber
Nucleic acids research, gkw960, 2016
1772016
A computational framework to explore large-scale biosynthetic diversity
JC Navarro-Muńoz, N Selem-Mojica, MW Mullowney, SA Kautsar, ...
Nature chemical biology 16 (1), 60-68, 2020
154*2020
Mechanisms and evolution of control logic in prokaryotic transcriptional regulation
SAFT van Hijum, MH Medema, OP Kuipers
Microbiology and Molecular Biology Reviews 73 (3), 481-509, 2009
1422009
Pathogen-induced activation of disease-suppressive functions in the endophytic root microbiome
VJ Carrión, J Perez-Jaramillo, V Cordovez, V Tracanna, M De Hollander, ...
Science 366 (6465), 606-612, 2019
1302019
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