Ali Mortazavi
Ali Mortazavi
Professor of Developmental and Cell Biology, University of California, Irvine
Verified email at uci.edu
Title
Cited by
Cited by
Year
Mapping and quantifying mammalian transcriptomes by RNA-Seq
A Mortazavi, BA Williams, K McCue, L Schaeffer, B Wold
Nature methods 5 (7), 621-628, 2008
121252008
An integrated encyclopedia of DNA elements in the human genome
ENCODE Project Consortium
Nature 489 (7414), 57-74, 2012
119302012
Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation
C Trapnell, BA Williams, G Pertea, A Mortazavi, G Kwan, MJ Van Baren, ...
Nature biotechnology 28 (5), 511-515, 2010
114252010
Landscape of transcription in human cells
S Djebali, CA Davis, A Merkel, A Dobin, T Lassmann, A Mortazavi, ...
Nature 489 (7414), 101-108, 2012
40802012
Genome-wide mapping of in vivo protein-DNA interactions
DS Johnson, A Mortazavi, RM Myers, B Wold
Science 316 (5830), 1497-1502, 2007
29082007
A survey of best practices for RNA-seq data analysis
A Conesa, P Madrigal, S Tarazona, D Gomez-Cabrero, A Cervera, ...
Genome biology 17 (1), 1-19, 2016
16602016
A comparative encyclopedia of DNA elements in the mouse genome
F Yue, Y Cheng, A Breschi, J Vierstra, W Wu, T Ryba, R Sandstrom, Z Ma, ...
Nature 515 (7527), 355-364, 2014
14152014
A user's guide to the encyclopedia of DNA elements (ENCODE)
ENCODE Project Consortium
PLoS biol 9 (4), e1001046, 2011
12322011
Extensive promoter-centered chromatin interactions provide a topological basis for transcription regulation
G Li, X Ruan, RK Auerbach, KS Sandhu, M Zheng, P Wang, HM Poh, ...
Cell 148 (1-2), 84-98, 2012
10962012
Computation for ChIP-seq and RNA-seq studies
S Pepke, B Wold, A Mortazavi
Nature methods 6 (11), S22-S32, 2009
6902009
Assessment of transcript reconstruction methods for RNA-seq
T Steijger, JF Abril, PG Engström, F Kokocinski, M Akerman, T Alioto, ...
Nature methods 10 (12), 1177-1184, 2013
5472013
iPSC-Derived Human Microglia-like Cells to Study Neurological Diseases
EM Abud, RN Ramirez, ES Martinez, LM Healy, CHH Nguyen, ...
Neuron 94 (2), 278-293. e9, 2017
3952017
An encyclopedia of mouse DNA elements (Mouse ENCODE)
JA Stamatoyannopoulos, M Snyder, R Hardison, B Ren, T Gingeras, ...
Genome Biology 13 (8), 418, 2012
3062012
Dynamic Transformations of Genome-wide Epigenetic Marking and Transcriptional Control Establish T Cell Identity
JA Zhang, A Mortazavi, BA Williams, BJ Wold, EV Rothenberg
Cell 149 (2), 467-482, 2012
2932012
Comparative analysis of the transcriptome across distant species
MB Gerstein, J Rozowsky, KK Yan, D Wang, C Cheng, JB Brown, ...
Nature 512 (7515), 445-448, 2014
2622014
Regeneration of fat cells from myofibroblasts during wound healing
MV Plikus, CF Guerrero-Juarez, M Ito, YR Li, PH Dedhia, Y Zheng, ...
Science 355 (6326), 748-752, 2017
2522017
Comparative genomics modeling of the NRSF/REST repressor network: from single conserved sites to genome-wide repertoire
A Mortazavi, ECL Thompson, ST Garcia, RM Myers, B Wold
Genome research 16 (10), 1208-1221, 2006
1772006
Effects of sequence variation on differential allelic transcription factor occupancy and gene expression
TE Reddy, J Gertz, F Pauli, KS Kucera, KE Varley, KM Newberry, ...
Genome research 22 (5), 860-869, 2012
1602012
RNA editing in the human ENCODE RNA-seq data
E Park, B Williams, BJ Wold, A Mortazavi
Genome Research 22 (9), 1626-1633, 2012
1592012
Expanded encyclopaedias of DNA elements in the human and mouse genomes
JE Moore, MJ Purcaro, HE Pratt, CB Epstein, N Shoresh, J Adrian, T Kawli, ...
Nature 583 (7818), 699-710, 2020
1192020
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Articles 1–20