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Nathan Salomonis
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GenMAPP, a new tool for viewing and analyzing microarray data on biological pathways
KD Dahlquist, N Salomonis, K Vranizan, SC Lawlor, BR Conklin
Nature genetics 31 (1), 19-20, 2002
11702002
MAPPFinder: using Gene Ontology and GenMAPP to create a global gene-expression profile from microarray data
SW Doniger, N Salomonis, KD Dahlquist, K Vranizan, SC Lawlor, ...
Genome biology 4 (1), 1-12, 2003
10942003
Single-cell analysis of mixed-lineage states leading to a binary cell fate choice
A Olsson, M Venkatasubramanian, VK Chaudhri, BJ Aronow, ...
Nature 537 (7622), 698-702, 2016
4772016
Granulocyte-monocyte progenitors and monocyte-dendritic cell progenitors independently produce functionally distinct monocytes
A Yez, SG Coetzee, A Olsson, DE Muench, BP Berman, DJ Hazelett, ...
Immunity 47 (5), 890-902. e4, 2017
3312017
AltAnalyze and DomainGraph: analyzing and visualizing exon expression data
D Emig, N Salomonis, J Baumbach, T Lengauer, BR Conklin, M Albrecht
Nucleic acids research 38 (suppl_2), W755-W762, 2010
3302010
GenMAPP 2: new features and resources for pathway analysis
N Salomonis, K Hanspers, AC Zambon, K Vranizan, SC Lawlor, ...
BMC bioinformatics 8, 1-12, 2007
3222007
Transcription factors operate across disease loci, with EBNA2 implicated in autoimmunity
JB Harley, X Chen, M Pujato, D Miller, A Maddox, C Forney, ...
Nature genetics 50 (5), 699-707, 2018
3142018
GO-Elite: a flexible solution for pathway and ontology over-representation
AC Zambon, S Gaj, I Ho, K Hanspers, K Vranizan, CT Evelo, BR Conklin, ...
Bioinformatics 28 (16), 2209-2210, 2012
2932012
Lentiviral vectors and protocols for creation of stable hESC lines for fluorescent tracking and drug resistance selection of cardiomyocytes
H Kita-Matsuo, M Barcova, N Prigozhina, N Salomonis, K Wei, JG Jacot, ...
PloS one 4 (4), e5046, 2009
2902009
Time-and exercise-dependent gene regulation in human skeletal muscle
AC Zambon, EL McDearmon, N Salomonis, KM Vranizan, KL Johansen, ...
Genome biology 4 (10), 1-12, 2003
2672003
Alternative splicing regulates mouse embryonic stem cell pluripotency and differentiation
N Salomonis, CR Schlieve, L Pereira, C Wahlquist, A Colas, AC Zambon, ...
Proceedings of the National Academy of Sciences 107 (23), 10514-10519, 2010
2512010
Reactive oxygen species-mediated therapeutic response and resistance in glioblastoma
E Singer, J Judkins, N Salomonis, L Matlaf, P Soteropoulos, S McAllister, ...
Cell death & disease 6 (1), e1601-e1601, 2015
2402015
Conditional expression of a Gi-coupled receptor causes ventricular conduction delay and a lethal cardiomyopathy
CH Redfern, MY Degtyarev, AT Kwa, N Salomonis, N Cotte, T Nanevicz, ...
Proceedings of the National Academy of Sciences 97 (9), 4826-4831, 2000
1972000
The kSORT assay to detect renal transplant patients at high risk for acute rejection: results of the multicenter AART study
S Roedder, T Sigdel, N Salomonis, S Hsieh, H Dai, O Bestard, D Metes, ...
PLoS medicine 11 (11), e1001759, 2014
1752014
Long non-coding RNA and alternative splicing modulations in Parkinson's leukocytes identified by RNA sequencing
L Soreq, A Guffanti, N Salomonis, A Simchovitz, Z Israel, H Bergman, ...
PLoS computational biology 10 (3), e1003517, 2014
1742014
Mammary gland involution as a multi-step process
T Stein, N Salomonis, BA Gusterson
Journal of mammary gland biology and neoplasia 12, 25-35, 2007
1702007
Single-nucleus RNA-seq identifies transcriptional heterogeneity in multinucleated skeletal myofibers
MJ Petrany, CO Swoboda, C Sun, K Chetal, X Chen, MT Weirauch, ...
Nature communications 11 (1), 6374, 2020
1692020
U2AF1 mutations induce oncogenic IRAK4 isoforms and activate innate immune pathways in myeloid malignancies
MA Smith, GS Choudhary, A Pellagatti, K Choi, LC Bolanos, TD Bhagat, ...
Nature cell biology 21 (5), 640-650, 2019
1682019
The Human Cell Atlas bone marrow single-cell interactive web portal
SB Hay, K Ferchen, K Chetal, HL Grimes, N Salomonis
Experimental hematology 68, 51-61, 2018
1632018
A robust method to derive functional neural crest cells from human pluripotent stem cells
FR Kreitzer, N Salomonis, A Sheehan, M Huang, JS Park, MJ Spindler, ...
American journal of stem cells 2 (2), 119, 2013
1582013
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