| A gut bacterial pathway metabolizes aromatic amino acids into nine circulating metabolites D Dodd, MH Spitzer, W Van Treuren, BD Merrill, AJ Hryckowian, ... Nature 551 (7682), 648-652, 2017 | 921 | 2017 |
| Gut-microbiota-targeted diets modulate human immune status HC Wastyk, GK Fragiadakis, D Perelman, D Dahan, BD Merrill, ... Cell 184 (16), 4137-4153. e14, 2021 | 623 | 2021 |
| Community-led, integrated, reproducible multi-omics with anvi’o AM Eren, E Kiefl, A Shaiber, I Veseli, SE Miller, MS Schechter, I Fink, ... Nature microbiology 6 (1), 3-6, 2021 | 423 | 2021 |
| A metabolomics pipeline for the mechanistic interrogation of the gut microbiome S Han, W Van Treuren, CR Fischer, BD Merrill, BC DeFelice, JM Sanchez, ... Nature 595 (7867), 415-420, 2021 | 221 | 2021 |
| Transient osmotic perturbation causes long-term alteration to the gut microbiota C Tropini, EL Moss, BD Merrill, KM Ng, SK Higginbottom, EP Casavant, ... Cell 173 (7), 1742-1754. e17, 2018 | 205 | 2018 |
| Recovery of the gut microbiota after antibiotics depends on host diet, community context, and environmental reservoirs KM Ng, A Aranda-Díaz, C Tropini, MR Frankel, W Van Treuren, ... Cell host & microbe 26 (5), 650-665. e4, 2019 | 195 | 2019 |
| Phase-variable capsular polysaccharides and lipoproteins modify bacteriophage susceptibility in Bacteroides thetaiotaomicron NT Porter, AJ Hryckowian, BD Merrill, JJ Fuentes, JO Gardner, ... Nature microbiology 5 (9), 1170-1181, 2020 | 94 | 2020 |
| Software-based analysis of bacteriophage genomes, physical ends, and packaging strategies BD Merrill, AT Ward, JH Grose, S Hope BMC genomics 17, 1-16, 2016 | 94 | 2016 |
| Robust variation in infant gut microbiome assembly across a spectrum of lifestyles MR Olm, D Dahan, MM Carter, BD Merrill, FB Yu, S Jain, X Meng, ... Science 376 (6598), 1220-1223, 2022 | 72 | 2022 |
| Community-led, integrated, reproducible multi-omics with anvi’o. Nat Microbiol 6: 3–6 AM Eren, E Kiefl, A Shaiber, I Veseli, SE Miller, MS Schechter, I Fink, ... | 72 | 2021 |
| Bacteroides thetaiotaomicron-infecting bacteriophage isolates inform sequence-based host range predictions AJ Hryckowian, BD Merrill, NT Porter, W Van Treuren, EJ Nelson, ... Cell Host & Microbe 28 (3), 371-379. e5, 2020 | 62 | 2020 |
| DDX6 represses aberrant activation of interferon-stimulated genes JH Lumb, Q Li, LM Popov, S Ding, MT Keith, BD Merrill, HB Greenberg, ... Cell reports 20 (4), 819-831, 2017 | 62 | 2017 |
| Bacteriophages as an alternative to conventional antibiotic use for the prevention or treatment of Paenibacillus larvae in honeybee hives TS Brady, BD Merrill, JA Hilton, AM Payne, MB Stephenson, S Hope Journal of invertebrate pathology 150, 94-100, 2017 | 42 | 2017 |
| Ultra-deep sequencing of Hadza hunter-gatherers recovers vanishing gut microbes MM Carter, MR Olm, BD Merrill, D Dahan, S Tripathi, SP Spencer, ... Cell 186 (14), 3111-3124. e13, 2023 | 40 | 2023 |
| Characterization of Paenibacillus larvae bacteriophages and their genomic relationships to firmicute bacteriophages BD Merrill, JH Grose, DP Breakwell, SH Burnett BMC genomics 15, 1-19, 2014 | 38 | 2014 |
| The genomes, proteomes, and structures of three novel phages that infect the Bacillus cereus group and carry putative virulence factors JH Grose, DM Belnap, JD Jensen, AD Mathis, JT Prince, BD Merrill, ... Journal of Virology 88 (20), 11846-11860, 2014 | 36 | 2014 |
| Putative type 1 thymidylate synthase and dihydrofolate reductase as signature genes of a novel bastille-like group of phages in the subfamily Spounavirinae PT Asare, TY Jeong, S Ryu, J Klumpp, MJ Loessner, BD Merrill, KP Kim BMC genomics 16, 1-15, 2015 | 25 | 2015 |
| Genome sequences of 19 novel Erwinia amylovora bacteriophages IND Esplin, JA Berg, R Sharma, RC Allen, DK Arens, CR Ashcroft, ... Genome announcements 5 (46), 10.1128/genomea. 00931-17, 2017 | 23 | 2017 |
| Characterization of Five Novel Brevibacillus Bacteriophages and Genomic Comparison of Brevibacillus Phages JA Berg, BD Merrill, JT Crockett, KP Esplin, MR Evans, KE Heaton, ... PloS one 11 (6), e0156838, 2016 | 18 | 2016 |
| Complete genome sequences of five Paenibacillus larvae bacteriophages MA Sheflo, AV Gardner, BD Merrill, JNB Fisher, BL Lunt, DP Breakwell, ... Genome announcements 1 (6), 10.1128/genomea. 00668-13, 2013 | 16 | 2013 |
Justin L. SonnenburgAlex and Susie Algard Endowed Professor, Stanford University School of MedicineVerified email at stanford.edu
