| Proteogenomic characterization reveals therapeutic vulnerabilities in lung adenocarcinoma MA Gillette, S Satpathy, S Cao, SM Dhanasekaran, SV Vasaikar, K Krug, ... Cell 182 (1), 200-225. e35, 2020 | 454 | 2020 |
| Integrated proteogenomic characterization of clear cell renal cell carcinoma DJ Clark, SM Dhanasekaran, F Petralia, J Pan, X Song, Y Hu, ... Cell 179 (4), 964-983. e31, 2019 | 441 | 2019 |
| Proteogenomic and metabolomic characterization of human glioblastoma LB Wang, A Karpova, MA Gritsenko, JE Kyle, S Cao, Y Li, D Rykunov, ... Cancer cell 39 (4), 509-528. e20, 2021 | 388 | 2021 |
| Epigenome-wide differences in pathology-free regions of multiple sclerosis–affected brains JL Huynh, P Garg, TH Thin, S Yoo, R Dutta, BD Trapp, V Haroutunian, ... Nature neuroscience 17 (1), 121-130, 2014 | 287 | 2014 |
| Proteogenomic characterization of pancreatic ductal adenocarcinoma L Cao, C Huang, DC Zhou, Y Hu, TM Lih, SR Savage, K Krug, DJ Clark, ... Cell 184 (19), 5031-5052. e26, 2021 | 270 | 2021 |
| Proteogenomic insights into the biology and treatment of HPV-negative head and neck squamous cell carcinoma C Huang, L Chen, SR Savage, RV Eguez, Y Dou, Y Li, ... Cancer cell 39 (3), 361-379. e16, 2021 | 214 | 2021 |
| Integrated proteogenomic characterization across major histological types of pediatric brain cancer F Petralia, N Tignor, B Reva, M Koptyra, S Chowdhury, D Rykunov, A Krek, ... Cell 183 (7), 1962-1985. e31, 2020 | 204 | 2020 |
| Common dysregulation network in the human prefrontal cortex underlies two neurodegenerative diseases M Narayanan, JL Huynh, K Wang, X Yang, S Yoo, J McElwee, B Zhang, ... Molecular systems biology 10 (7), 743, 2014 | 168 | 2014 |
| Integrative Analysis of DNA Methylation and Gene Expression Data Identifies EPAS1 as a Key Regulator of COPD S Yoo, S Takikawa, P Geraghty, C Argmann, J Campbell, L Lin, T Huang, ... PLoS genetics 11 (1), e1004898, 2015 | 99 | 2015 |
| Functional characterization of DNA methylation in the oligodendrocyte lineage S Moyon, JL Huynh, D Dutta, F Zhang, D Ma, S Yoo, R Lawrence, ... Cell reports 15 (4), 748-760, 2016 | 92 | 2016 |
| A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low-and high-degree liver fibrosis S Yoo, W Wang, Q Wang, MI Fiel, E Lee, SP Hiotis, J Zhu BMC medicine 15, 1-17, 2017 | 65 | 2017 |
| Integrated proteogenomic characterization of clear cell renal cell carcinoma DJ Clark, SM Dhanasekaran, F Petralia, J Pan, X Song, Y Hu, ... Cell 180 (1), 207, 2020 | 52 | 2020 |
| Oncogenic role of SFRP2 in p53-mutant osteosarcoma development via autocrine and paracrine mechanism H Kim, S Yoo, R Zhou, A Xu, JM Bernitz, Y Yuan, AM Gomes, MG Daniel, ... Proceedings of the National Academy of Sciences 115 (47), E11128-E11137, 2018 | 52 | 2018 |
| SiteComp: a server for ligand binding site analysis in protein structures Y Lin, S Yoo, R Sanchez Bioinformatics 28 (8), 1172-1173, 2012 | 47 | 2012 |
| Prototypical oncogene family Myc defines unappreciated distinct lineage states of small cell lung cancer AS Patel, S Yoo, R Kong, T Sato, A Sinha, S Karam, L Bao, M Fridrikh, ... Science Advances 7 (5), eabc2578, 2021 | 42 | 2021 |
| A reference profile-free deconvolution method to infer cancer cell-intrinsic subtypes and tumor-type-specific stromal profiles L Wang, RP Sebra, JP Sfakianos, K Allette, W Wang, S Yoo, N Bhardwaj, ... Genome medicine 12, 1-22, 2020 | 41 | 2020 |
| MODMatcher: multi-omics data matcher for integrative genomic analysis S Yoo, T Huang, JD Campbell, E Lee, Z Tu, MW Geraci, CA Powell, ... PLoS computational biology 10 (8), e1003790, 2014 | 39 | 2014 |
| Clinical proteomic tumor analysis consortium. Integrated proteogenomic characterization of clear cell renal cell carcinoma DJ Clark, SM Dhanasekaran, F Petralia, J Pan, X Song, Y Hu, ... Cell 179 (4), 964-983, 2019 | 36 | 2019 |
| Epigenomic profiling discovers trans-lineage SOX2 partnerships driving tumor heterogeneity in lung squamous cell carcinoma T Sato, S Yoo, R Kong, A Sinha, P Chandramani-Shivalingappa, A Patel, ... Cancer research 79 (24), 6084-6100, 2019 | 25 | 2019 |
| DreamAI: algorithm for the imputation of proteomics data W Ma, S Kim, S Chowdhury, Z Li, M Yang, S Yoo, F Petralia, J Jacobsen, ... Biorxiv, 2020.07. 21.214205, 2020 | 23 | 2020 |
