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Joseph (Joey) Davis
Joseph (Joey) Davis
Associate Professor | Department of Biology | MIT
Geverifieerd e-mailadres voor mit.edu - Homepage
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Addressing preferred specimen orientation in single-particle cryo-EM through tilting
YZ Tan, PR Baldwin, JH Davis, JR Williamson, CS Potter, B Carragher, ...
Nature methods 14 (8), 793-796, 2017
7852017
Measuring the activity of BioBrick promoters using an in vivo reference standard
JR Kelly, AJ Rubin, JH Davis, CM Ajo-Franklin, J Cumbers, MJ Czar, ...
Journal of biological engineering 3, 1-13, 2009
5012009
CryoDRGN: reconstruction of heterogeneous cryo-EM structures using neural networks
ED Zhong, T Bepler, B Berger, JH Davis
Nature Methods 18 (2), 176-185, 2021
4622021
Design, construction and characterization of a set of insulated bacterial promoters
JH Davis, AJ Rubin, RT Sauer
Nucleic acids research 39 (3), 1131-1141, 2010
4232010
Modular Assembly of the Bacterial Large Ribosomal Subunit
JH Davis, YZ Tan, B Carragher, CS Potter, D Lyumkis, JR Williamson
Cell 167 (6), 1610-1622. e15, 2016
2112016
Structure and dynamics of bacterial ribosome biogenesis
JH Davis, JR Williamson
Philosophical Transactions of the Royal Society B: Biological Sciences 372 …, 2017
1372017
Reconstructing continuous distributions of 3D protein structure from cryo-EM images
ED Zhong, T Bepler, JH Davis, B Berger
arXiv preprint arXiv:1909.05215, 2019
115*2019
Nitric oxide binding to prokaryotic homologs of the soluble guanylate cyclase β1 H-NOX domain
EM Boon, JH Davis, R Tran, DS Karow, SH Huang, D Pan, ...
Journal of Biological Chemistry 281 (31), 21892-21902, 2006
1092006
Characterization of functional heme domains from soluble guanylate cyclase
DS Karow, D Pan, JH Davis, S Behrends, RA Mathies, MA Marletta
Biochemistry 44 (49), 16266-16274, 2005
992005
Structures of radial spokes and associated complexes important for ciliary motility
M Gui, M Ma, E Sze-Tu, X Wang, F Koh, ED Zhong, B Berger, JH Davis, ...
Nature structural & molecular biology 28 (1), 29-37, 2021
922021
Discovery of a small molecule that inhibits bacterial ribosome biogenesis
JM Stokes, JH Davis, CS Mangat, JR Williamson, ED Brown
Elife 3, e03574, 2014
902014
Functional domains of the 50S subunit mature late in the assembly process
A Jomaa, N Jain, JH Davis, JR Williamson, RA Britton, J Ortega
Nucleic Acids Research 42 (5), 3419-3435, 2014
852014
Measuring the dynamics of E. coli ribosome biogenesis using pulse-labeling and quantitative mass spectrometry
SS Chen, E Sperling, JM Silverman, JH Davis, J Williamson
Molecular BioSystems, 2012
742012
CryoDRGN2: Ab Initio Neural Reconstruction of 3D Protein Structures From Real Cryo-EM Images
ED Zhong, A Lerer, JH Davis, B Berger
Proceedings of the IEEE/CVF International Conference on Computer Vision …, 2021
692021
Single-molecule denaturation and degradation of proteins by the AAA+ ClpXP protease
Y Shin, JH Davis, RR Brau, A Martin, JA Kenniston, TA Baker, RT Sauer, ...
Proceedings of the National Academy of Sciences 106 (46), 19340-19345, 2009
612009
YphC and YsxC GTPases assist the maturation of the central protuberance, GTPase associated region and functional core of the 50S ribosomal subunit
X Ni, JH Davis, N Jain, A Razi, S Benlekbir, AG McArthur, JL Rubinstein, ...
Nucleic Acids Research 44 (17), 8442-8455, 2016
572016
Uncovering structural ensembles from single-particle cryo-EM data using cryoDRGN
LF Kinman, BM Powell, ED Zhong, B Berger, JH Davis
Nature Protocols 18 (2), 319-339, 2023
522023
Small-molecule control of protein degradation using split adaptors
JH Davis, TA Baker, RT Sauer
ACS chemical biology 6 (11), 1205-1213, 2011
512011
Methods and molecules for yield improvement involving metabolic engineering
JC Way, JH Davis
US Patent 10,385,367, 2019
472019
Binding properties of YjeQ (RsgA), RbfA, RimM and Era to assembly intermediates of the 30S subunit
B Thurlow, JH Davis, V Leong, TF Moraes, JR Williamson, J Ortega
Nucleic acids research 44 (20), 9918-9932, 2016
462016
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Artikelen 1–20