| Direct-coupling analysis of residue coevolution captures native contacts across many protein families F Morcos, A Pagnani, B Lunt, A Bertolino, DS Marks, C Sander, ... Proceedings of the National Academy of Sciences 108 (49), E1293-E1301, 2011 | 964 | 2011 |
| Protein 3D structure computed from evolutionary sequence variation DS Marks, LJ Colwell, R Sheridan, TA Hopf, A Pagnani, R Zecchina, ... PLoS One 6 (12), e28766, 2011 | 862 | 2011 |
| A critical assessment of Mus musculus gene function prediction using integrated genomic evidence L Peña-Castillo, M Tasan, CL Myers, H Lee, T Joshi, C Zhang, Y Guan, ... Genome biology 9 (1), S2, 2008 | 277 | 2008 |
| Integrated transcriptional and competitive endogenous RNA networks are cross-regulated in permissive molecular environments U Ala, FA Karreth, C Bosia, A Pagnani, R Taulli, V Léopold, Y Tay, ... Proceedings of the National Academy of Sciences 110 (18), 7154-7159, 2013 | 246 | 2013 |
| Coloring random graphs R Mulet, A Pagnani, M Weigt, R Zecchina Physical review letters 89 (26), 268701, 2002 | 222 | 2002 |
| Critical exponents of the KPZ equation via multi-surface coding numerical simulations E Marinari, A Pagnani, G Parisi Journal of Physics A: Mathematical and General 33 (46), 8181, 2000 | 151 | 2000 |
| Genome-wide analysis identifies a functional association of Tet1 and Polycomb repressive complex 2 in mouse embryonic stem cells F Neri, D Incarnato, A Krepelova, S Rapelli, A Pagnani, R Zecchina, ... Genome biology 14 (8), R91, 2013 | 134 | 2013 |
| Perturbation biology: inferring signaling networks in cellular systems EJ Molinelli, A Korkut, W Wang, ML Miller, NP Gauthier, X Jing, P Kaushik, ... PLoS computational biology 9 (12), e1003290, 2013 | 123 | 2013 |
| Fast and accurate multivariate Gaussian modeling of protein families: Predicting residue contacts and protein-interaction partners C Baldassi, M Zamparo, C Feinauer, A Procaccini, R Zecchina, M Weigt, ... PloS one 9 (3), e92721, 2014 | 115 | 2014 |
| Width distributions and the upper critical dimension of Kardar-Parisi-Zhang interfaces E Marinari, A Pagnani, G Parisi, Z Rácz Physical review E 65 (2), 026136, 2002 | 113 | 2002 |
| Modelling competing endogenous RNA networks C Bosia, A Pagnani, R Zecchina PloS one 8 (6), e66609, 2013 | 112 | 2013 |
| Polynomial iterative algorithms for coloring and analyzing random graphs A Braunstein, R Mulet, A Pagnani, M Weigt, R Zecchina Physical Review E 68 (3), 036702, 2003 | 106 | 2003 |
| Simultaneous reconstruction of multiple signaling pathways via the prize-collecting Steiner forest problem N Tuncbag, A Braunstein, A Pagnani, SSC Huang, J Chayes, C Borgs, ... Journal of computational biology 20 (2), 124-136, 2013 | 97 | 2013 |
| Improving contact prediction along three dimensions C Feinauer, MJ Skwark, A Pagnani, E Aurell PLoS computational biology 10 (10), e1003847, 2014 | 82 | 2014 |
| Simultaneous identification of specifically interacting paralogs and interprotein contacts by direct coupling analysis T Gueudré, C Baldassi, M Zamparo, M Weigt, A Pagnani Proceedings of the National Academy of Sciences 113 (43), 12186-12191, 2016 | 80 | 2016 |
| Glassy transition in a disordered model for the RNA secondary structure A Pagnani, G Parisi, F Ricci-Tersenghi Physical review letters 84 (9), 2026, 2000 | 78 | 2000 |
| Scalings of domain wall energies in two dimensional Ising spin glasses C Amoruso, E Marinari, OC Martin, A Pagnani Physical review letters 91 (8), 087201, 2003 | 68 | 2003 |
| Threshold values, stability analysis, and high-q asymptotics for the coloring problem on random graphs F Krząkała, A Pagnani, M Weigt Physical Review E 70 (4), 046705, 2004 | 67 | 2004 |
| Estimating the size of the solution space of metabolic networks A Braunstein, R Mulet, A Pagnani BMC bioinformatics 9 (1), 240, 2008 | 63 | 2008 |
| Inference of sparse combinatorial-control networks from gene-expression data: a message passing approach M Bailly-Bechet, A Braunstein, A Pagnani, M Weigt, R Zecchina BMC bioinformatics 11 (1), 355, 2010 | 53 | 2010 |
Riccardo Zecchinaprofessor, theoretical physics, Bocconi UniversityVerified email at unibocconi.it
