Harianto Tjong
Title
Cited by
Cited by
Year
Genome architectures revealed by tethered chromosome conformation capture and population-based modeling
R Kalhor, H Tjong, N Jayathilaka, F Alber, L Chen
Nature biotechnology 30 (1), 90-98, 2011
5722011
Physical tethering and volume exclusion determine higher-order genome organization in budding yeast
H Tjong, K Gong, L Chen, F Alber
Genome research 22 (7), 1295-1305, 2012
2032012
DISPLAR: an accurate method for predicting DNA-binding sites on protein surfaces
H Tjong, HX Zhou
Nucleic Acids Research 35 (5), 1465-1477, 2007
1562007
TopDom: an efficient and deterministic method for identifying topological domains in genomes
H Shin, Y Shi, C Dai, H Tjong, K Gong, F Alber, XJ Zhou
Nucleic acids research 44 (7), e70-e70, 2016
1532016
Population-based 3D genome structure analysis reveals driving forces in spatial genome organization
H Tjong, W Li, R Kalhor, C Dai, S Hao, K Gong, Y Zhou, H Li, XJ Zhou, ...
Proceedings of the National Academy of Sciences 113 (12), E1663-E1672, 2016
1422016
GBr6: A parameterization-free, accurate, analytical generalized Born method
H Tjong, HX Zhou
The Journal of Physical Chemistry B 111 (11), 3055-3061, 2007
1042007
The three-dimensional genome organization of Drosophila melanogaster through data integration
Q Li, H Tjong, X Li, K Gong, XJ Zhou, I Chiolo, F Alber
Genome biology 18 (1), 1-22, 2017
632017
Picky comprehensively detects high-resolution structural variants in nanopore long reads
L Gong, CH Wong, WC Cheng, H Tjong, F Menghi, CY Ngan, ET Liu, ...
Nature methods 15 (6), 455-460, 2018
602018
Spontaneous conformational change and toxin binding in α7 acetylcholine receptor: Insight into channel activation and inhibition
M Yi, H Tjong, HX Zhou
Proceedings of the National Academy of Sciences 105 (24), 8280-8285, 2008
532008
Prediction of protein solubility from calculation of transfer free energy
H Tjong, HX Zhou
Biophysical journal 95 (6), 2601-2609, 2008
522008
: A generalized Born method for accurately reproducing solvation energy of the nonlinear Poisson-Boltzmann equation
H Tjong, HX Zhou
The Journal of chemical physics 126 (19), 05B609, 2007
502007
Producing genome structure populations with the dynamic and automated PGS software
N Hua, H Tjong, H Shin, K Gong, XJ Zhou, F Alber
Nature protocols 13 (5), 915-926, 2018
412018
Chromatin interaction analyses elucidate the roles of PRC2-bound silencers in mouse development
CY Ngan, CH Wong, H Tjong, W Wang, RL Goldfeder, C Choi, H He, ...
Nature genetics 52 (3), 264-272, 2020
352020
Exploring the spatial and temporal organization of a cell’s proteome
M Beck, M Topf, Z Frazier, H Tjong, M Xu, S Zhang, F Alber
Journal of Structural Biology 173 (3), 483-496, 2011
352011
PI2PE: protein interface/interior prediction engine
H Tjong, S Qin, HX Zhou
Nucleic acids research 35 (suppl_2), W357-W362, 2007
352007
Mapping the global chromatin connectivity network for Sox2 function in neural stem cell maintenance
JA Bertolini, R Favaro, Y Zhu, M Pagin, CY Ngan, CH Wong, H Tjong, ...
Cell stem cell 24 (3), 462-476. e6, 2019
342019
Global reorganization of budding yeast chromosome conformation in different physiological conditions
E Dultz, H Tjong, E Weider, M Herzog, B Young, C Brune, D Müllner, ...
Journal of Cell Biology 212 (3), 321-334, 2016
332016
Mining 3D genome structure populations identifies major factors governing the stability of regulatory communities
C Dai, W Li, H Tjong, S Hao, Y Zhou, Q Li, L Chen, B Zhu, F Alber, ...
Nature communications 7 (1), 1-11, 2016
322016
On the dielectric boundary in Poisson− Boltzmann calculations
H Tjong, HX Zhou
Journal of chemical theory and computation 4 (3), 507-514, 2008
322008
Comparative 3D genome structure analysis of the fission and the budding yeast
K Gong, H Tjong, XJ Zhou, F Alber
PLoS One 10 (3), e0119672, 2015
222015
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Articles 1–20