Jan Schröder
Jan Schröder
Postdoc researcher, Monash University
Verified email at monash.edu
Title
Cited by
Cited by
Year
Musket: a multistage k-mer spectrum-based error corrector for Illumina sequence data
Y Liu, J Schröder, B Schmidt
Bioinformatics 29 (3), 308-315, 2013
2502013
SHREC: a short-read error correction method
J Schröder, H Schröder, SJ Puglisi, R Sinha, B Schmidt
Bioinformatics 25 (17), 2157-2163, 2009
1962009
UV-associated mutations underlie the etiology of MCV-negative Merkel cell carcinomas
SQ Wong, K Waldeck, IA Vergara, J Schröder, J Madore, JS Wilmott, ...
Cancer research 75 (24), 5228-5234, 2015
1942015
Correcting errors in short reads by multiple alignments
L Salmela, J Schröder
Bioinformatics 27 (11), 1455-1461, 2011
1902011
The architecture and evolution of cancer neochromosomes
DW Garsed, OJ Marshall, VDA Corbin, A Hsu, L Di Stefano, J Schröder, ...
Cancer cell 26 (5), 653-667, 2014
1322014
GRIDSS: sensitive and specific genomic rearrangement detection using positional de Bruijn graph assembly
D Cameron, J Schröder, J Penington, H Do, R Molania, A Dobrovic, ...
Genome Research, 2050-2060, 2017
1052017
Socrates: identification of genomic rearrangements in tumour genomes by re-aligning soft clipped reads
J Schröder, A Hsu, SE Boyle, G Macintyre, M Cmero, RW Tothill, ...
Bioinformatics 30 (8), 1064-1072, 2014
752014
HECTOR: a parallel multistage homopolymer spectrum based error corrector for 454 sequencing data
A Wirawan, RS Harris, Y Liu, B Schmidt, J Schröder
BMC bioinformatics 15 (1), 1-13, 2014
402014
Reference-free validation of short read data
J Schröder, J Bailey, T Conway, J Zobel
PLoS One 5 (9), e12681, 2010
362010
Genomic characterisation of Eμ-Myc mouse lymphomas identifies Bcor as a Myc co-operative tumour-suppressor gene
M Lefebure, R Tothill, E Kruse, E Hawkins, J Shortt, G Matthews, ...
Nature Communications, 2017
252017
A massively parallel architecture for bioinformatics
G Pfeiffer, S Baumgart, J Schröder, M Schimmler
International Conference on Computational Science, 994-1003, 2009
172009
An orthotopic mouse model of gastric cancer invasion and metastasis
R Busuttil, D Liu, N Costanzo, J Schröder, C Mitchell, A Boussioutas
Scientific Reports 8 (825), 2018
152018
A forward genetic screen identifies a negative regulator of rapid Ca2+-dependent cell egress (MS1) in the intracellular parasite Toxoplasma gondii
J McCoy, R Stewart, A Uboldi, D Li, J Schröder, N Scott, A Papenfuss, ...
The Journal of Biological Chemistry, 7662-7674, 2017
142017
Inferring structural variant cancer cell fraction
M Cmero, K Yuan, CS Ong, J Schröder, NM Corcoran, T Papenfuss, ...
Nature communications 11 (1), 1-15, 2020
132020
The Scalloped and Nerfin-1 transcription factors cooperate to maintain neuronal cell fate
JHA Vissers, F Froldi, J Schröder, AT Papenfuss, LY Cheng, KF Harvey
Cell reports 25 (6), 1561-1576. e7, 2018
132018
Massively parallelized DNA motif search on the reconfigurable hardware platform COPACOBANA
J Schröder, L Wienbrandt, G Pfeiffer, M Schimmler
IAPR International Conference on Pattern Recognition in Bioinformatics, 436-447, 2008
132008
Expression of a chimeric antigen receptor in multiple leukocyte lineages in transgenic mice
CSM Yong, JA Westwood, J Schröder, AT Papenfuss, B von Scheidt, ...
PLoS One 10 (10), e0140543, 2015
122015
Embryonic lethality in homozygous human Her-2 transgenic mice due to disruption of the Pds5b gene
CSM Yong, J Sharkey, B Duscio, B Venville, WZ Wei, RF Jones, ...
PloS one 10 (9), e0136817, 2015
122015
SVclone: inferring structural variant cancer cell fraction
M Cmero, CS Ong, K Yuan, J Schröder, K Mo, N Corcoran, A Papenfuss, ...
BioRxiv, 2017
82017
Improving the power of structural variation detection by augmenting the reference
J Schröder, S Girirajan, AT Papenfuss, P Medvedev
PloS one 10 (8), e0136771, 2015
72015
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Articles 1–20