Gabriel Al-Ghalith
Gabriel Al-Ghalith
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Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2
E Bolyen, JR Rideout, MR Dillon, NA Bokulich, CC Abnet, GA Al-Ghalith, ...
Nature biotechnology 37 (8), 852-857, 2019
QIIME 2: Reproducible, interactive, scalable, and extensible microbiome data science
E Bolyen, JR Rideout, MR Dillon, NA Bokulich, C Abnet, GA Al-Ghalith, ...
PeerJ Preprints, 2018
Complex host genetics influence the microbiome in inflammatory bowel disease
D Knights, MS Silverberg, RK Weersma, D Gevers, G Dijkstra, H Huang, ...
Genome medicine 6 (12), 1-11, 2014
Captivity humanizes the primate microbiome
JB Clayton, P Vangay, HU Huang, T Ward, BM Hillmann, GA Al-Ghalith, ...
Proceedings of the National Academy of Sciences 113 (37), 10376-10381, 2016
Chemotherapy‐driven dysbiosis in the intestinal microbiome
E Montassier, T Gastinne, P Vangay, GA Al‐Ghalith, ...
Alimentary pharmacology & therapeutics 42 (5), 515-528, 2015
US immigration westernizes the human gut microbiome
P Vangay, AJ Johnson, TL Ward, GA Al-Ghalith, RR Shields-Cutler, ...
Cell 175 (4), 962-972. e10, 2018
Pretreatment gut microbiome predicts chemotherapy-related bloodstream infection
E Montassier, GA Al-Ghalith, T Ward, S Corvec, T Gastinne, G Potel, ...
Genome medicine 8 (1), 1-11, 2016
Systematic review: human gut dysbiosis induced by non‐antibiotic prescription medications
Q Le Bastard, GA Al‐Ghalith, M Grégoire, G Chapelet, F Javaudin, ...
Alimentary Pharmacology & Therapeutics 47 (3), 332-345, 2018
Daily sampling reveals personalized diet-microbiome associations in humans
AJ Johnson, P Vangay, GA Al-Ghalith, BM Hillmann, TL Ward, ...
Cell host & microbe 25 (6), 789-802. e5, 2019
Evaluating the information content of shallow shotgun metagenomics
B Hillmann, GA Al-Ghalith, RR Shields-Cutler, Q Zhu, DM Gohl, ...
MSystems 3 (6), 2018
NINJA-OPS: fast accurate marker gene alignment using concatenated ribosomes
GA Al-Ghalith, E Montassier, HN Ward, D Knights
PLoS computational biology 12 (1), e1004658, 2016
Patterns of seasonality and group membership characterize the gut microbiota in a longitudinal study of wild Verreaux's sifakas (Propithecus verreauxi)
A Springer, C Fichtel, GA Al‐Ghalith, F Koch, KR Amato, JB Clayton, ...
Ecology and evolution 7 (15), 5732-5745, 2017
Development of the human mycobiome over the first month of life and across body sites
TL Ward, MG Dominguez-Bello, T Heisel, G Al-Ghalith, D Knights, ...
MSystems 3 (3), 2018
Antibiotic-induced acceleration of type 1 diabetes alters maturation of innate intestinal immunity
XS Zhang, J Li, KA Krautkramer, M Badri, T Battaglia, TC Borbet, H Koh, ...
Elife 7, e37816, 2018
SHI7 is a Self-Learning pipeline for multipurpose Short-Read DNA quality control
GA Al-Ghalith, B Hillmann, K Ang, R Shields-Cutler, D Knights
MSystems 3 (3), 2018
High-fat diet changes fungal microbiomes and interkingdom relationships in the murine gut
T Heisel, E Montassier, A Johnson, G Al-Ghalith, YW Lin, LN Wei, ...
MSphere 2 (5), 2017
Phylogenomics of 10,575 genomes reveals evolutionary proximity between domains Bacteria and Archaea
Q Zhu, U Mai, W Pfeiffer, S Janssen, F Asnicar, JG Sanders, ...
Nature communications 10 (1), 1-14, 2019
Associations between nutrition, gut microbiome, and health in a novel nonhuman primate model
JB Clayton, GA Al-Ghalith, HT Long, B Van Tuan, F Cabana, H Huang, ...
Scientific reports 8 (1), 11159, 2018
QIIME 2: reproducible, interactive, scalable, and extensible microbiome data science. PeerJ Preprints 6: e27295v2
E Bolyen, JR Rideout, MR Dillon, NA Bokulich, C Abnet, GA Al-Ghalith, ...
An increased abundance of clostridiaceae characterizes arthritis in inflammatory bowel disease and rheumatoid arthritis: a cross-sectional study
DA Muñiz Pedrogo, J Chen, B Hillmann, P Jeraldo, G Al-Ghalith, V Taneja, ...
Inflammatory bowel diseases 25 (5), 902-913, 2019
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