Yi-Chieh Wu
Cited by
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Integrative analysis of 111 reference human epigenomes
A Kundaje, W Meuleman, J Ernst, M Bilenky, A Yen, A Heravi-Moussavi, ...
Nature 518 (7539), 317-330, 2015
A comparative encyclopedia of DNA elements in the mouse genome
F Yue, Y Cheng, A Breschi, J Vierstra, W Wu, T Ryba, R Sandstrom, Z Ma, ...
Nature 515 (7527), 355-364, 2014
Highly evolvable malaria vectors: the genomes of 16 Anopheles mosquitoes
DE Neafsey, RM Waterhouse, MR Abai, SS Aganezov, MA Alekseyev, ...
Science 347 (6217), 2015
Extensive introgression in a malaria vector species complex revealed by phylogenomics
MC Fontaine, JB Pease, A Steele, RM Waterhouse, DE Neafsey, ...
Science 347 (6217), 2015
Comparative analysis of regulatory information and circuits across distant species
AP Boyle, CL Araya, C Brdlik, P Cayting, C Cheng, Y Cheng, K Gardner, ...
Nature 512 (7515), 453-456, 2014
Phylogenetic Identification and Functional Characterization of Orthologs and Paralogs across Human, Mouse, Fly, and Worm. bioRxiv. 2014
YC Wu, MS Bansal, MD Rasmussen
Publisher Full Text, 0
TreeFix: statistically informed gene tree error correction using species trees
YC Wu, MD Rasmussen, MS Bansal, M Kellis
Systematic Biology 62 (1), 110-120, 2013
Most parsimonious reconciliation in the presence of gene duplication, loss, and deep coalescence using labeled coalescent trees
YC Wu, MD Rasmussen, MS Bansal, M Kellis
Genome research 24 (3), 475-486, 2014
Improved gene tree error correction in the presence of horizontal gene transfer
MS Bansal, YC Wu, EJ Alm, M Kellis
Bioinformatics 31 (8), 1211-1218, 2015
Pareto-optimal phylogenetic tree reconciliation
R Libeskind-Hadas, YC Wu, MS Bansal, M Kellis
Bioinformatics 30 (12), i87-i95, 2014
Evolution at the Subgene Level: Domain Rearrangements in the Drosophila Phylogeny
YC Wu, MD Rasmussen, M Kellis
Molecular biology and evolution 29 (2), 689-705, 2012
Phylogenetic identification and functional characterization of orthologs and paralogs across human, mouse, fly, and worm
YC Wu, MS Bansal, MD Rasmussen, J Herrero, M Kellis
bioRxiv, 005736, 2014
Inverse gold photonic crystals and conjugated polymer coated opals for functional materials
PB Landon, J Gutierrez, JP Ferraris, IL Martinez, R Giridharagopal, ...
Physica B: Condensed Matter 338 (1-4), 165-170, 2003
Coestimation of gene trees and reconciliations under a duplication-loss-coalescence model
B Zhang, YC Wu
International Symposium on Bioinformatics Research and Applications, 196-210, 2017
Computing the diameter of the space of maximum parsimony reconciliations in the duplication-transfer-loss model
J Haack, E Zupke, A Ramirez, YC Wu, R Libeskind-Hadas
IEEE/ACM transactions on computational biology and bioinformatics 16 (1), 14-22, 2018
Multiple optimal reconciliations under the duplication-loss-coalescence model
H Du, YS Ong, M Knittel, R Mawhorter, N Liu, G Gross, R Tojo, ...
IEEE/ACM transactions on computational biology and bioinformatics, 2019
Predicting antibody developability from sequence using machine learning
X Chen, T Dougherty, C Hong, R Schibler, YC Zhao, R Sadeghi, ...
bioRxiv, 2020
Reconciliation feasibility in the presence of gene duplication, loss, and coalescence with multiple individuals per species
J Rogers, A Fishberg, N Youngs, YC Wu
BMC bioinformatics 18 (1), 1-10, 2017
Inferring pareto-optimal reconciliations across multiple event costs under the duplication-loss-coalescence model
R Mawhorter, N Liu, R Libeskind-Hadas, YC Wu
BMC bioinformatics 20 (20), 1-13, 2019
eMPRess: a systematic cophylogeny reconciliation tool
S Santichaivekin, Q Yang, J Liu, R Mawhorter, J Jiang, T Wesley, YC Wu, ...
Bioinformatics, 2020
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