Shannon E. Ellis
Shannon E. Ellis
UC San Diego, Department of Cognitive Science
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Transcriptome analysis reveals dysregulation of innate immune response genes and neuronal activity-dependent genes in autism
S Gupta, SE Ellis, FN Ashar, A Moes, JS Bader, J Zhan, AB West, ...
Nature communications 5 (1), 1-8, 2014
3742014
Reproducible RNA-seq analysis using recount2
L Collado-Torres, A Nellore, K Kammers, SE Ellis, MA Taub, KD Hansen, ...
Nature biotechnology 35 (4), 319-321, 2017
2352017
Characterization of genetic loci that affect susceptibility to inflammatory bowel diseases in African Americans
C Huang, T Haritunians, DT Okou, DJ Cutler, ME Zwick, KD Taylor, ...
Gastroenterology 149 (6), 1575-1586, 2015
622015
Transcriptome analysis of cortical tissue reveals shared sets of downregulated genes in autism and schizophrenia
SE Ellis, R Panitch, AB West, DE Arking
Translational psychiatry 6 (5), e817-e817, 2016
452016
Cross-tissue integration of genetic and epigenetic data offers insight into autism spectrum disorder
SV Andrews, SE Ellis, KM Bakulski, B Sheppard, LA Croen, ...
Nature communications 8 (1), 1-10, 2017
402017
Improving the value of public RNA-seq expression data by phenotype prediction
SE Ellis, L Collado-Torres, A Jaffe, JT Leek
Nucleic acids research 46 (9), e54-e54, 2018
372018
RNA-Seq optimization with eQTL gold standards
SE Ellis, S Gupta, FN Ashar, JS Bader, AB West, DE Arking
BMC genomics 14 (1), 1-11, 2013
272013
Exaggerated CpH methylation in the autism-affected brain
SE Ellis, S Gupta, A Moes, AB West, DE Arking
Molecular autism 8 (1), 1-8, 2017
252017
How to share data for collaboration
SE Ellis, JT Leek
The American Statistician 72 (1), 53-57, 2018
162018
recount: A large-scale resource of analysis-ready RNA-seq expression data
L Collado-Torres, A Nellore, K Kammers, SE Ellis, MA Taub, KD Hansen, ...
bioRxiv, 068478, 2016
62016
Integrated transcriptomic and proteomic analysis of primary human umbilical vein endothelial cells
AK Madugundu, CH Na, RS Nirujogi, S Renuse, KP Kim, KH Burns, ...
Proteomics 19 (15), 1800315, 2019
22019
recount-brain: a curated repository of human brain RNA-seq datasets metadata
A Razmara, SE Ellis, DJ Sokolowski, S Davis, MD Wilson, JT Leek, ...
bioRxiv, 618025, 2019
12019
recount_brain cross-study example
SE Ellis
2018
694. RNA-Seq Samples Beyond the Known Transcriptome with Derfinder Available via Recount
LC Torres, A Nellore, K Kammers, S Ellis, M Taub, K Hansen, A Jaffe, ...
Biological Psychiatry 81 (10), S281-S282, 2017
2017
MULTI-OMIC DATA PROVIDE A MORE COMPLETE UNDERSTANDING OF THE AUTISTIC BRAIN
SE Ellis
Johns Hopkins University, 2016
2016
Using methylation quantitative trait loci to enhance GWAS results for autism spectrum disorder across developmental stage and tissue type
SV Andrews, SE Ellis, KM Bakulski, CL Acosta, AP Feinberg, DE Arking, ...
GENETIC EPIDEMIOLOGY 39 (7), 530-530, 2015
2015
Archive for May, 2016
S Ellis
2Department of Neurology, University of Alabama at Birmingham, Birmingham, Alabama 35294, USA
SE Ellis, R Panitch, AB West, DE Arking
Using the human brain to understand “omics” in autism
S Ellis
HOME› HEALTH› PSYCHOLOGY
S Ellis
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Artikelen 1–20