Sampo Pyysalo
Sampo Pyysalo
University of Turku
Verified email at utu.fi
Title
Cited by
Cited by
Year
Universal dependencies v1: A multilingual treebank collection
J Nivre, MC De Marneffe, F Ginter, Y Goldberg, J Hajic, CD Manning, ...
Proceedings of the Tenth International Conference on Language Resources and …, 2016
9882016
BRAT: a web-based tool for NLP-assisted text annotation
P Stenetorp, S Pyysalo, G Topić, T Ohta, S Ananiadou, J Tsujii
Proceedings of the Demonstrations at the 13th Conference of the European …, 2012
9592012
Overview of BioNLP’09 shared task on event extraction
JD Kim, T Ohta, S Pyysalo, Y Kano, J Tsujii
Proceedings of the BioNLP 2009 workshop companion volume for shared task, 1-9, 2009
754*2009
BioInfer: a corpus for information extraction in the biomedical domain
S Pyysalo, F Ginter, J Heimonen, J Björne, J Boberg, J Järvinen, ...
BMC bioinformatics 8 (1), 1-24, 2007
4782007
Distributional semantics resources for biomedical text processing
S Pyysalo, F Ginter, H Moen, T Salakoski, S Ananiadou
Languages in Biology and Medicine, 2013
417*2013
CoNLL 2018 shared task: Multilingual parsing from raw text to universal dependencies
D Zeman, J Hajic, M Popel, M Potthast, M Straka, F Ginter, J Nivre, ...
Proceedings of the CoNLL 2018 Shared Task: Multilingual parsing from raw …, 2018
3592018
All-paths graph kernel for protein-protein interaction extraction with evaluation of cross-corpus learning
A Airola, S Pyysalo, J Björne, T Pahikkala, F Ginter, T Salakoski
BMC bioinformatics 9 (11), 1-12, 2008
3372008
How to train good word embeddings for biomedical NLP
B Chiu, G Crichton, A Korhonen, S Pyysalo
Proceedings of the 15th workshop on biomedical natural language processing …, 2016
2682016
Comparative analysis of five protein-protein interaction corpora
S Pyysalo, A Airola, J Heimonen, J Björne, F Ginter, T Salakoski
BMC bioinformatics 9 (3), 1-11, 2008
2612008
Event extraction for systems biology by text mining the literature
S Ananiadou, S Pyysalo, J Tsujii, DB Kell
Trends in biotechnology 28 (7), 381-390, 2010
2412010
Overview of BioNLP shared task 2013
C Nédellec, R Bossy, JD Kim, JJ Kim, T Ohta, S Pyysalo, P Zweigenbaum
Proceedings of the BioNLP shared task 2013 workshop, 1-7, 2013
2052013
Universal Dependencies 1.2
J Nivre, Ž Agić, MJ Aranzabe, M Asahara, A Atutxa, M Ballesteros, J Bauer, ...
Universal Dependencies Consortium, 2015
1902015
Attending to characters in neural sequence labeling models
M Rei, GKO Crichton, S Pyysalo
arXiv preprint arXiv:1611.04361, 2016
1492016
Complex event extraction at PubMed scale
J Björne, F Ginter, S Pyysalo, J Tsujii, T Salakoski
Bioinformatics 26 (12), i382-i390, 2010
1402010
Large-scale event extraction from literature with multi-level gene normalization
S Van Landeghem, J Björne, CH Wei, K Hakala, S Pyysalo, S Ananiadou, ...
PloS one 8 (4), e55814, 2013
1162013
A graph kernel for protein-protein interaction extraction
A Airola, S Pyysalo, J Björne, T Pahikkala, F Ginter, T Salakoski
Proceedings of the workshop on current trends in biomedical natural language …, 2008
1112008
Event extraction across multiple levels of biological organization
S Pyysalo, T Ohta, M Miwa, HC Cho, J Tsujii, S Ananiadou
Bioinformatics 28 (18), i575-i581, 2012
1062012
A neural network multi-task learning approach to biomedical named entity recognition
G Crichton, S Pyysalo, B Chiu, A Korhonen
BMC bioinformatics 18 (1), 1-14, 2017
992017
Intrinsic evaluation of word vectors fails to predict extrinsic performance
B Chiu, A Korhonen, S Pyysalo
Proceedings of the 1st workshop on evaluating vector-space representations …, 2016
992016
Multilingual is not enough: BERT for Finnish
A Virtanen, J Kanerva, R Ilo, J Luoma, J Luotolahti, T Salakoski, F Ginter, ...
arXiv preprint arXiv:1912.07076, 2019
682019
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Articles 1–20