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Matthias Bernt
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MITOS: Improved de novo Metazoan Mitochondrial Genome Annotation
M Bernt, A Donath, F Jühling, F Externbrink, C Florentz, G Fritzsch, J Pütz, ...
Molecular Phylogenetics and Evolution, 2012
37262012
CREx: inferring genomic rearrangements based on common intervals
M Bernt, D Merkle, K Ramsch, G Fritzsch, M Perseke, D Bernhard, ...
Bioinformatics 23 (21), 2957-2958, 2007
2832007
Improved annotation of protein-coding genes boundaries in metazoan mitochondrial genomes
A Donath, F Jühling, M Al-Arab, SH Bernhart, F Reinhardt, PF Stadler, ...
Nucleic acids research 47 (20), 10543-10552, 2019
2742019
Genetic aspects of mitochondrial genome evolution
M Bernt, A Braband, B Schierwater, PF Stadler
Molecular phylogenetics and evolution 69 (2), 328-338, 2013
2422013
Improved systematic tRNA gene annotation allows new insights into the evolution of mitochondrial tRNA structures and into the mechanisms of mitochondrial genome rearrangements
F Jühling, J Pütz, M Bernt, A Donath, M Middendorf, C Florentz, PF Stadler
Nucleic acids research 40 (7), 2833-2845, 2012
2382012
A comprehensive analysis of bilaterian mitochondrial genomes and phylogeny
M Bernt, C Bleidorn, A Braband, J Dambach, A Donath, G Fritzsch, ...
Molecular Phylogenetics and Evolution 69 (2), 352-364, 2013
1952013
Evolution of mitochondrial gene orders in echinoderms
M Perseke, G Fritzsch, K Ramsch, M Bernt, D Merkle, M Middendorf, ...
Molecular Phylogenetics and Evolution 47 (2), 855-864, 2008
932008
Mitogenomics at the base of Metazoa
HJ Osigus, M Eitel, M Bernt, A Donath, B Schierwater
Molecular Phylogenetics and Evolution 69 (2), 339-351, 2013
822013
An algorithm for inferring mitogenome rearrangements in a phylogenetic tree
M Bernt, D Merkle, M Middendorf
Comparative Genomics: International Workshop, RECOMB-CG 2008, Paris, France …, 2008
582008
Correction to ‘The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2022 update’
E Afgan, A Nekrutenko, BA Grüning, D Blankenberg, J Goecks, ...
Nucleic acids research 50 (15), 2022
422022
Bioinformatics methods for the comparative analysis of metazoan mitochondrial genome sequences
M Bernt, A Braband, M Middendorf, B Misof, O Rota-Stabelli, PF Stadler
Molecular Phylogenetics and Evolution 69 (2), 320-327, 2013
392013
GC skew and mitochondrial origins of replication
AH Sahyoun, M Bernt, PF Stadler, K Tout
Mitochondrion 17, 56-66, 2014
362014
Mitochondrial genome evolution in species belonging to the Phialocephala fortinii s.l. - Acephala applanata species complex
A Duò, R Bruggmann, S Zoller, M Bernt, CR Grünig
Bmc Genomics 13, 1-17, 2012
362012
A method for computing an inventory of metazoan mitochondrial gene order rearrangements
M Bernt, M Middendorf
BMC bioinformatics 12 (9), 1-11, 2011
362011
Using median sets for inferring phylogenetic trees
M Bernt, D Merkle, M Middendorf
Bioinformatics 23 (2), e129-e135, 2007
262007
Towards a comprehensive picture of alloacceptor tRNA remolding in metazoan mitochondrial genomes
AH Sahyoun, M Hölzer, F Jühling, C Höner zu Siederdissen, M Al-Arab, ...
Nucleic Acids Research 43 (16), 8044-8056, 2015
252015
The enigmatic mitochondrial genome of Rhabdopleura compacta(Pterobranchia) reveals insights into selection of an efficient tRNA system and supports …
M Perseke, J Hetmank, M Bernt, PF Stadler, M Schlegel, D Bernhard
BMC Evolutionary Biology 11, 1-12, 2011
252011
Mitogenomics reveals a novel genetic code in Hemichordata.
Y Li, KM Kocot, MG Tassia, JT Cannon, M Bernt, KM Halanych
222018
Genome rearrangement based on reversals that preserve conserved intervals
M Bernt, D Merkle, M Middendorf
IEEE/ACM Transactions on Computational Biology and Bioinformatics 3 (3), 275-288, 2006
222006
Accurate annotation of protein-coding genes in mitochondrial genomes
M Al Arab, CH Zu Siederdissen, K Tout, AH Sahyoun, PF Stadler, M Bernt
Molecular phylogenetics and evolution 106, 209-216, 2017
202017
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Articles 1–20