Martin Hemberg
Martin Hemberg
Brigham and Women's Hospital
Verified email at
Cited by
Cited by
Widespread transcription at neuronal activity-regulated enhancers
TK Kim, M Hemberg, JM Gray, AM Costa, DM Bear, J Wu, DA Harmin, ...
Nature 465 (7295), 182-187, 2010
The human cell atlas
A Regev, SA Teichmann, ES Lander, I Amit, C Benoist, E Birney, ...
elife 6, e27041, 2017
SC3: consensus clustering of single-cell RNA-seq data
VY Kiselev, K Kirschner, MT Schaub, T Andrews, A Yiu, T Chandra, ...
Nature methods 14 (5), 483-486, 2017
Transcriptome-wide noise controls lineage choice in mammalian progenitor cells
HH Chang, M Hemberg, M Barahona, DE Ingber, S Huang
Nature 453 (7194), 544-547, 2008
Challenges in unsupervised clustering of single-cell RNA-seq data
VY Kiselev, TS Andrews, M Hemberg
Nature Reviews Genetics 20 (5), 273-282, 2019
Temporal tracking of microglia activation in neurodegeneration at single-cell resolution
H Mathys, C Adaikkan, F Gao, JZ Young, E Manet, M Hemberg, ...
Cell reports 21 (2), 366-380, 2017
scmap: projection of single-cell RNA-seq data across data sets
VY Kiselev, A Yiu, M Hemberg
Nature methods 15 (5), 359-362, 2018
Disruption of DNA-methylation-dependent long gene repression in Rett syndrome
HW Gabel, B Kinde, H Stroud, CS Gilbert, DA Harmin, NR Kastan, ...
Nature 522 (7554), 89-93, 2015
Genome-wide analysis of MEF2 transcriptional program reveals synaptic target genes and neuronal activity-dependent polyadenylation site selection
SW Flavell, TK Kim, JM Gray, DA Harmin, M Hemberg, EJ Hong, ...
Neuron 60 (6), 1022-1038, 2008
Tau promotes neurodegeneration through global chromatin relaxation
B Frost, M Hemberg, J Lewis, MB Feany
Nature neuroscience 17 (3), 357-366, 2014
Trophic levels and trophic tangles: the prevalence of omnivory in real food webs
RM Thompson, M Hemberg, BM Starzomski, JB Shurin
Ecology 88 (3), 612-617, 2007
Astrocyte layers in the mammalian cerebral cortex revealed by a single-cell in situ transcriptomic map
OA Bayraktar, T Bartels, S Holmqvist, V Kleshchevnikov, A Martirosyan, ...
Nature neuroscience 23 (4), 500-509, 2020
Genome-wide activity-dependent MeCP2 phosphorylation regulates nervous system development and function
S Cohen, HW Gabel, M Hemberg, AN Hutchinson, LA Sadacca, DH Ebert, ...
Neuron 72 (1), 72-85, 2011
Souporcell: robust clustering of single-cell RNA-seq data by genotype without reference genotypes
H Heaton, AM Talman, A Knights, M Imaz, DJ Gaffney, R Durbin, ...
Nature methods 17 (6), 615-620, 2020
Identifying cell populations with scRNASeq
TS Andrews, M Hemberg
Molecular aspects of medicine 59, 114-122, 2018
Genome-wide identification and characterization of functional neuronal activity–dependent enhancers
AN Malik, T Vierbuchen, M Hemberg, AA Rubin, E Ling, CH Couch, ...
Nature neuroscience 17 (10), 1330-1339, 2014
M3Drop: dropout-based feature selection for scRNASeq
TS Andrews, M Hemberg
Bioinformatics 35 (16), 2865-2867, 2019
Tutorial: guidelines for the computational analysis of single-cell RNA sequencing data
TS Andrews, VY Kiselev, D McCarthy, M Hemberg
Nature protocols 16 (1), 1-9, 2021
The Malaria Cell Atlas: Single parasite transcriptomes across the complete Plasmodium life cycle
VM Howick, AJC Russell, T Andrews, H Heaton, AJ Reid, K Natarajan, ...
Science 365 (6455), eaaw2619, 2019
Enhancer RNAs: a class of long noncoding RNAs synthesized at enhancers
TK Kim, M Hemberg, JM Gray
Cold Spring Harbor perspectives in biology 7 (1), a018622, 2015
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