Erik Lindahl
Erik Lindahl
Professor of Biophysics, Stockholm University & KTH, Science for Life Laboratory
Verified email at - Homepage
Cited by
Cited by
GROMACS: High performance molecular simulations through multi-level parallelism from laptops to supercomputers
MJ Abraham, T Murtola, R Schulz, S Pll, JC Smith, B Hess, E Lindahl
SoftwareX 1, 19-25, 2015
GROMACS 4: algorithms for highly efficient, load-balanced, and scalable molecular simulation
B Hess, C Kutzner, D Van Der Spoel, E Lindahl
Journal of chemical theory and computation 4 (3), 435-447, 2008
GROMACS: fast, flexible, and free
D Van Der Spoel, E Lindahl, B Hess, G Groenhof, AE Mark, ...
Journal of computational chemistry 26 (16), 1701-1718, 2005
GROMACS 3.0: a package for molecular simulation and trajectory analysis
E Lindahl, B Hess, D Van Der Spoel
Molecular modeling annual 7, 306-317, 2001
GROMACS 4.5: a high-throughput and highly parallel open source molecular simulation toolkit
S Pronk, S Pll, R Schulz, P Larsson, P Bjelkmar, R Apostolov, MR Shirts, ...
Bioinformatics 29 (7), 845-854, 2013
New tools for automated high-resolution cryo-EM structure determination in RELION-3
J Zivanov, T Nakane, BO Forsberg, D Kimanius, WJH Hagen, E Lindahl, ...
elife 7, e42166, 2018
GROMACS: fast, flexible, and free
DVD Spoel, E Lindahl, B Hess, G Groenhof, AE Mark, HJC Berendsen
J Comput Chem 26 (16), 1701-1718, 2005
Tackling exascale software challenges in molecular dynamics simulations with GROMACS
S Pll, MJ Abraham, C Kutzner, B Hess, E Lindahl
Solving Software Challenges for Exascale: International Conference on…, 2015
Implementation of the CHARMM force field in GROMACS: analysis of protein stability effects from correction maps, virtual interaction sites, and water models
P Bjelkmar, P Larsson, MA Cuendet, B Hess, E Lindahl
Journal of chemical theory and computation 6 (2), 459-466, 2010
Accelerated cryo-EM structure determination with parallelisation using GPUs in RELION-2
D Kimanius, BO Forsberg, SHW Scheres, E Lindahl
elife 5, e18722, 2016
GROMACS user manual version 3.2
D van der Spoel, E Lindahl, B Hess, AR Van Buuren, E Apol, ...
Nijenborgh 4, 9747, 2004
Mesoscopic undulations and thickness fluctuations in lipid bilayers from molecular dynamics simulations
E Lindahl, O Edholm
Biophysical journal 79 (1), 426-433, 2000
Molecular dynamics simulations of phospholipid bilayers with cholesterol
C Hofs, E Lindahl, O Edholm
Biophysical journal 84 (4), 2192-2206, 2003
the GROMACS development team
MJ Abraham, D Van Der Spoel, E Lindahl, B Hess
GROMACS user manual version 5 (4), 2016
Characterisation of molecular motions in cryo-EM single-particle data by multi-body refinement in RELION
T Nakane, D Kimanius, E Lindahl, SHW Scheres
elife 7, e36861, 2018
Molecular recognition of a single sphingolipid species by a protein’s transmembrane domain
FX Contreras, AM Ernst, P Haberkant, P Bjrkholm, E Lindahl, B Gnen, ...
Nature 481 (7382), 525-529, 2012
Heterogeneous parallelization and acceleration of molecular dynamics simulations in GROMACS
S Pll, A Zhmurov, P Bauer, M Abraham, M Lundborg, A Gray, B Hess, ...
The Journal of Chemical Physics 153 (13), 2020
Membrane proteins: molecular dynamics simulations
E Lindahl, MSP Sansom
Current opinion in structural biology 18 (4), 425-431, 2008
NOMAD-Ref: visualization, deformation and refinement of macromolecular structures based on all-atom normal mode analysis
E Lindahl, C Azuara, P Koehl, M Delarue
Nucleic acids research 34 (suppl_2), W52-W56, 2006
Simulation of the spontaneous aggregation of phospholipids into bilayers
SJ Marrink, E Lindahl, O Edholm, AE Mark
Journal of the American Chemical Society 123 (35), 8638-8639, 2001
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