| methylKit: a comprehensive R package for the analysis of genome-wide DNA methylation profiles A Akalin, M Kormaksson, S Li, FE Garrett-Bakelman, ME Figueroa, ... Genome biology 13 (10), 1, 2012 | 1859 | 2012 |
| A comprehensive assessment of RNA-seq accuracy, reproducibility and information content by the Sequencing Quality Control Consortium SEQC/MAQC-III Consortium Nature Biotechnology 32 (9), 903-914, 2014 | 864 | 2014 |
| Systematic evaluation of spliced alignment programs for RNA-seq data PG Engström, T Steijger, B Sipos, GR Grant, A Kahles, G Rätsch, ... Nature methods 10 (12), 1185-1191, 2013 | 607 | 2013 |
| Distinct evolution and dynamics of epigenetic and genetic heterogeneity in acute myeloid leukemia S Li, FE Garrett-Bakelman, SS Chung, MA Sanders, T Hricik, F Rapaport, ... Nature Medicine 22 (7), 792-799, 2016 | 398 | 2016 |
| Detecting and correcting systematic variation in large-scale RNA sequencing data S Li, PP Łabaj, P Zumbo, P Sykacek, W Shi, L Shi, J Phan, PY Wu, ... Nature biotechnology 32 (9), 888-895, 2014 | 373 | 2014 |
| Deletion of Asxl1 results in myelodysplasia and severe developmental defects in vivo O Abdel-Wahab, J Gao, M Adli, A Dey, T Trimarchi, YR Chung, C Kuscu, ... The Journal of experimental medicine 210 (12), 2641-2659, 2013 | 369 | 2013 |
| The Pivotal Regulatory Landscape of RNA Modifications S Li, CE Mason Annual Review of Genomics and Human Genetics 15 (1), 2014 | 367 | 2014 |
| Relapse-specific mutations in NT5C2 in childhood acute lymphoblastic leukemia JA Meyer, J Wang, LE Hogan, JJ Yang, S Dandekar, JP Patel, Z Tang, ... Nature genetics 45 (3), 290-294, 2013 | 334 | 2013 |
| Identification of kinase fusion oncogenes in post-Chernobyl radiation-induced thyroid cancers. JC Ricarte-Filho, S Li, ME Garcia-Rendueles, C Montero-Conde, F Voza, ... The Journal of clinical investigation, 2013 | 251 | 2013 |
| Multi-platform assessment of transcriptome profiling using RNA-seq in the ABRF next-generation sequencing study S Li, SW Tighe, CM Nicolet, D Grove, S Levy, W Farmerie, A Viale, ... Nature biotechnology 32 (9), 915-925, 2014 | 249 | 2014 |
| A benchmark for RNA-seq quantification pipelines M Teng, MI Love, CA Davis, S Djebali, A Dobin, BR Graveley, S Li, ... Genome Biology 17 (1), 1, 2016 | 230 | 2016 |
| TET2 Deficiency Causes Germinal Center Hyperplasia, Impairs Plasma Cell Differentiation, and Promotes B-cell Lymphomagenesis PM Dominguez, H Ghamlouch, W Rosikiewicz, P Kumar, W Béguelin, ... Cancer discovery 8 (12), 1632-1653, 2018 | 153 | 2018 |
| Genetic and epigenetic heterogeneity in acute myeloid leukemia S Li, C Mason, A Melnick Current Opinion in Genetics & Development 36 (Cancer genomics), 100-106, 2016 | 149 | 2016 |
| Lung mesenchymal cells elicit lipid storage in neutrophils that fuel breast cancer lung metastasis P Li, M Lu, J Shi, Z Gong, L Hua, Q Li, B Lim, XHF Zhang, X Chen, S Li, ... Nature Immunology, 1-12, 2020 | 146 | 2020 |
| DNA methylation-calling tools for Oxford Nanopore sequencing: a survey and human epigenome-wide evaluation Y Liu, W Rosikiewicz, ZP Pan, N Jillette, P Wang, A Taghbalout, J Foox, ... Genome Biology 22 (1), 2021 | 144 | 2021 |
| Assessing technical performance in differential gene expression experiments with external spike-in RNA control ratio mixtures SA Munro, SP Lund, PS Pine, H Binder, DA Clevert, A Conesa, J Dopazo, ... Nature communications 5, 2014 | 128 | 2014 |
| Loss of CHD1 Promotes Heterogeneous Mechanisms of Resistance to AR-Targeted Therapy via Chromatin Dysregulation Z Zhang, C Zhou, X Li, SD Barnes, S Deng, E Hoover, CC Chen, YS Lee, ... Cancer Cell, 2020 | 123 | 2020 |
| An optimized algorithm for detecting and annotating regional differential methylation S Li, FE Garrett-Bakelman, A Akalin, P Zumbo, R Levine, BL To, ID Lewis, ... BMC bioinformatics 14 (5), 1, 2013 | 122 | 2013 |
| Ontogeny and Biology of Human Small Airway Epithelial Club Cells WL Zuo, SA Shenoy, S Li, SL O'Beirne, Y Strulovici-Barel, PL Leopold, ... American journal of respiratory and critical care medicine, 2018 | 97 | 2018 |
| CRISPR artificial splicing factors M Du, N Jillette, JJ Zhu, S Li, AW Cheng Nature Communications 11 (1), 1-11, 2020 | 96 | 2020 |
Christopher MasonProfessor of Genomics, Physiology, & Biophysics, Weill Cornell MedicineVerified email at med.cornell.edu
