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Chao Dai
Chao Dai
Predicine
Verified email at stanford.edu
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Cited by
Year
HiChIP: efficient and sensitive analysis of protein-directed genome architecture
MR Mumbach, AJ Rubin, RA Flynn, C Dai, PA Khavari, WJ Greenleaf, ...
Nature methods 13 (11), 919-922, 2016
9472016
Enhancer connectome in primary human cells identifies target genes of disease-associated DNA elements
MR Mumbach, AT Satpathy, EA Boyle, C Dai, BG Gowen, SW Cho, ...
Nature genetics 49 (11), 1602-1612, 2017
4462017
Dense chromatin activates Polycomb repressive complex 2 to regulate H3 lysine 27 methylation
W Yuan, T Wu, H Fu, C Dai, H Wu, N Liu, X Li, M Xu, Z Zhang, T Niu, ...
science 337 (6097), 971-975, 2012
3092012
TopDom: an efficient and deterministic method for identifying topological domains in genomes
H Shin, Y Shi, C Dai, H Tjong, K Gong, F Alber, XJ Zhou
Nucleic acids research 44 (7), e70-e70, 2016
2642016
Population-based 3D genome structure analysis reveals driving forces in spatial genome organization
H Tjong, W Li, R Kalhor, C Dai, S Hao, K Gong, Y Zhou, H Li, XJ Zhou, ...
Proceedings of the National Academy of Sciences 113 (12), E1663-E1672, 2016
1872016
Functional DNA demethylation is accompanied by chromatin accessibility
K Pandiyan, JS You, X Yang, C Dai, XJ Zhou, SB Baylin, PA Jones, ...
Nucleic acids research 41 (7), 3973-3985, 2013
952013
SNF5 is an essential executor of epigenetic regulation during differentiation
JS You, DD De Carvalho, C Dai, M Liu, K Pandiyan, XJ Zhou, G Liang, ...
PLoS genetics 9 (4), e1003459, 2013
552013
Mining 3D genome structure populations identifies major factors governing the stability of regulatory communities
C Dai, W Li, H Tjong, S Hao, Y Zhou, Q Li, L Chen, B Zhu, F Alber, ...
Nature communications 7 (1), 1-11, 2016
422016
Avelumab combined with stereotactic ablative body radiotherapy in metastatic castration-resistant prostate cancer: the phase 2 ICE-PAC clinical trial
EM Kwan, L Spain, A Anton, CL Gan, L Garrett, D Chang, E Liow, ...
European urology 81 (3), 253-262, 2022
412022
Integrating many co-splicing networks to reconstruct splicing regulatory modules
C Dai, W Li, J Liu, XJ Zhou
BMC systems biology 6, 1-9, 2012
232012
Plasma cell–free DNA profiling of PTEN-PI3K-AKT pathway aberrations in metastatic castration-resistant prostate cancer
EM Kwan, C Dai, H Fettke, C Hauser, MM Docanto, P Bukczynska, N Ng, ...
JCO Precision Oncology 5, 622-637, 2021
222021
Integrative analysis of many RNA-seq datasets to study alternative splicing
W Li, C Dai, S Kang, XJ Zhou
Methods 67 (3), 313-324, 2014
212014
algorithm to identify frequent coupled modules from two-layered network series: application to study transcription and splicing coupling
C Dai
202012
An integrative modular approach to systematically predict gene-phenotype associations
MR Mehan, J Nunez-Iglesias, C Dai, MS Waterman, XJ Zhou
BMC bioinformatics 11, 1-12, 2010
202010
Genomic complexity predicts resistance to endocrine therapy and CDK4/6 inhibition in hormone receptor–positive (HR+)/HER2-negative metastatic breast cancer
AA Davis, J Luo, T Zheng, C Dai, X Dong, L Tan, R Suresh, ...
Clinical Cancer Research 29 (9), 1719-1729, 2023
132023
Inducing pairwise gene interactions from time-series data by EDA based bayesian network
C Dai, J Liu
2005 IEEE Engineering in Medicine and Biology 27th Annual Conference, 7746-7749, 2006
132006
Circulating cell-free DNA-based detection of tumor suppressor gene copy number loss and its clinical implication in metastatic prostate cancer
X Dong, T Zheng, M Zhang, C Dai, L Wang, L Wang, R Zhang, Y Long, ...
Frontiers in Oncology 11, 720727, 2021
82021
Integrative analysis of many biological networks to study gene regulation
W Li, C Dai, XJ Zhou, G Tseng, D Ghosh, XJ Zhou
Integrating Omics Data 68, 2015
32015
A simple method of inferring pairwise gene interactions from microarray time series data
J Liu, B Ni, C Dai, N Wang
2005 International Conference on Machine Learning and Cybernetics 6, 3346-3351, 2005
32005
BRCA-deficient metastatic prostate cancer has an adverse prognosis and distinct genomic phenotype
H Fettke, C Dai, EM Kwan, T Zheng, P Du, N Ng, P Bukczynska, ...
EBioMedicine 95, 2023
22023
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