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Bony  De Kumar
Bony De Kumar
Director of Opeartions, Yale Center for Genome Analysis, Yale University
Verified email at yale.edu
Title
Cited by
Cited by
Year
Dynamic transcriptional events in embryonic stem cells mediated by the super elongation complex (SEC)
C Lin, AS Garrett, B De Kumar, ER Smith, M Gogol, C Seidel, R Krumlauf, ...
Genes & development 25 (14), 1486-1498, 2011
1902011
Comparative transmissibility of SARS-CoV-2 variants delta and alpha in New England, USA
R Earnest, R Uddin, N Matluk, N Renzette, SE Turbett, KJ Siddle, C Loreth, ...
Cell Reports Medicine 3 (4), 2022
1552022
Poised RNA polymerase II changes over developmental time and prepares genes for future expression
B Gaertner, J Johnston, K Chen, N Wallaschek, A Paulson, AS Garruss, ...
Cell reports 2 (6), 1670-1683, 2012
1092012
Rapid emergence of SARS-CoV-2 Omicron variant is associated with an infection advantage over Delta in vaccinated persons
C Chaguza, A Coppi, R Earnest, D Ferguson, N Kerantzas, F Warner, ...
Med 3 (5), 325-334. e4, 2022
812022
A sandbox for prediction and integration of DNA, RNA, and proteins in single cells
MD Luecken, DB Burkhardt, R Cannoodt, C Lance, A Agrawal, H Aliee, ...
Thirty-fifth conference on neural information processing systems datasets …, 2021
642021
Analysis of dynamic changes in retinoid-induced transcription and epigenetic profiles of murine Hox clusters in ES cells
B De Kumar, ME Parrish, BD Slaughter, JR Unruh, M Gogol, C Seidel, ...
Genome research 25 (8), 1229-1243, 2015
642015
HOXs and lincRNAs: Two sides of the same coin
B De Kumar, R Krumlauf
Science advances 2 (1), e1501402, 2016
582016
Dynamic regulation of Nanog and stem cell-signaling pathways by Hoxa1 during early neuro-ectodermal differentiation of ES cells
B De Kumar, HJ Parker, ME Parrish, JJ Lange, BD Slaughter, JR Unruh, ...
Proceedings of the National Academy of Sciences 114 (23), 5838-5845, 2017
572017
Accelerated SARS-CoV-2 intrahost evolution leading to distinct genotypes during chronic infection
C Chaguza, AM Hahn, ME Petrone, S Zhou, D Ferguson, MI Breban, ...
Cell Reports Medicine 4 (2), 2023
552023
Cancer-specific mutation of GATA3 disrupts the transcriptional regulatory network governed by Estrogen Receptor alpha, FOXA1 and GATA3
M Takaku, SA Grimm, B De Kumar, BD Bennett, PA Wade
Nucleic acids research 48 (9), 4756-4768, 2020
492020
Hox genes: Downstream “effectors” of retinoic acid signaling in vertebrate embryogenesis
C Nolte, B De Kumar, R Krumlauf
Genesis 57 (7-8), e23306, 2019
492019
Hoxa1 targets signaling pathways during neural differentiation of ES cells and mouse embryogenesis
B De Kumar, HJ Parker, A Paulson, ME Parrish, J Zeitlinger, R Krumlauf
Developmental Biology 432 (1), 151–164, 2017
472017
Retinoid-Sensitive Epigenetic Regulation of the Hoxb Cluster Maintains Normal Hematopoiesis and Inhibits Leukemogenesis
Cell stem cell 22 (5), 740-754, 2018
442018
A Hox-TALE regulatory circuit for neural crest patterning is conserved across vertebrates
HJ Parker, B De Kumar, SA Green, KD Prummel, C Hess, CK Kaufman, ...
Nature communications 10 (1), 1189, 2019
412019
HOXA1 and TALE proteins display cross-regulatory interactions and form a combinatorial binding code on HOXA1 targets
B De Kumar, HJ Parker, A Paulson, ME Parrish, I Pushel, NP Singh, ...
Genome research 27 (9), 1501-1512, 2017
382017
Assessment of clinical effectiveness of BNT162b2 COVID-19 vaccine in US adolescents
CR Oliveira, LM Niccolai, H Sheikha, L Elmansy, CC Kalinich, ...
JAMA network open 5 (3), e220935-e220935, 2022
212022
A six-amino-acid motif is a major determinant in functional evolution of HOX1 proteins
NP Singh, B De Kumar, A Paulson, ME Parrish, Y Zhang, L Florens, ...
Genes & Development 34 (23-24), 1680-1696, 2020
192020
Age-dependent impairment in antibody responses elicited by a homologous CoronaVac booster dose
BA Filardi, VS Monteiro, PV Schwartzmann, V do Prado Martins, ...
Science translational medicine 15 (683), eade6023, 2023
102023
New England Variant Investigation Team
R Earnest, R Uddin, N Matluk, N Renzette, SE Turbett, KJ Siddle, C Loreth, ...
Comparative transmissibility of SARS-CoV-2 variants Delta and Alpha in New …, 2022
102022
The Hox protein conundrum: The “specifics” of DNA binding for Hox proteins and their partners
B De Kumar, DC Darland
Developmental biology 477, 284-292, 2021
92021
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