| A DNA integrity network in the yeast Saccharomyces cerevisiae X Pan, P Ye, DS Yuan, X Wang, JS Bader, JD Boeke Cell 124 (5), 1069-1081, 2006 | 627 | 2006 |
| A systems biology analysis of the Drosophila phagosome LM Stuart, J Boulais, GM Charriere, EJ Hennessy, S Brunet, I Jutras, ... Nature 445 (7123), 95-101, 2007 | 267 | 2007 |
| Global synthetic-lethality analysis and yeast functional profiling SL Ooi, X Pan, BD Peyser, P Ye, PB Meluh, DS Yuan, RA Irizarry, ... TRENDS in Genetics 22 (1), 56-63, 2006 | 215 | 2006 |
| Gene function prediction from congruent synthetic lethal interactions in yeast P Ye, BD Peyser, X Pan, JD Boeke, FA Spencer, JS Bader Molecular systems biology 1 (1), 2005.0026, 2005 | 190 | 2005 |
| Reevaluation of T cell receptor excision circles as a measure of human recent thymic emigrants P Ye, DE Kirschner The Journal of Immunology 168 (10), 4968-4979, 2002 | 175 | 2002 |
| Reconciled rat and human metabolic networks for comparative toxicogenomics and biomarker predictions B EM, R KD, D BV, L ZI, K GL, Y P, W A, P JA Nat Commun 8, 14250, 2017 | 162 | 2017 |
| Active retrotransposition by a synthetic L1 element in mice W An, JS Han, SJ Wheelan, ES Davis, CE Coombes, P Ye, C Triplett, ... Proceedings of the National Academy of Sciences 103 (49), 18662-18667, 2006 | 129 | 2006 |
| The thymus during HIV disease: role in pathogenesis and in immune recovery P Ye, DE Kirschner, AP Kourtis Current HIV research 2 (2), 177-183, 2004 | 120 | 2004 |
| Gene expression in the fetal mouse ovary is altered by exposure to low doses of bisphenol A C Lawson, M Gieske, B Murdoch, P Ye, Y Li, T Hassold, PA Hunt Biology of Reproduction 84 (1), 79-86, 2011 | 109 | 2011 |
| Intact piRNA pathway prevents L1 mobilization in male meiosis SJ Newkirk, S Lee, FC Grandi, V Gaysinskaya, JM Rosser, ... Proceedings of the National Academy of Sciences 114 (28), E5635-E5644, 2017 | 95 | 2017 |
| Human CST facilitates genome-wide RAD51 recruitment to GC-rich repetitive sequences in response to replication stress M Chastain, Q Zhou, O Shiva, M Fadri-Moskwik, L Whitmore, P Jia, X Dai, ... Cell reports 16 (5), 1300-1314, 2016 | 84 | 2016 |
| Hybrid capture-based genomic profiling of circulating tumor DNA from patients with estrogen receptor-positive metastatic breast cancer JH Chung, D Pavlick, R Hartmaier, AB Schrock, L Young, B Forcier, P Ye, ... Annals of Oncology 28 (11), 2866-2873, 2017 | 77 | 2017 |
| Measuring emigration of human thymocytes by T-cell receptor excision circles P Ye, DE Kirschner Critical Reviews™ in Immunology 22 (5-6), 2002 | 68 | 2002 |
| Retrotransposition creates sloping shores: a graded influence of hypomethylated CpG islands on flanking CpG sites FC Grandi, JM Rosser, SJ Newkirk, J Yin, X Jiang, Z Xing, L Whitmore, ... Genome research 25 (8), 1135-1146, 2015 | 61 | 2015 |
| Human chromosome 21 orthologous region on mouse chromosome 17 is a major determinant of Down syndrome-related developmental cognitive deficits L Zhang, K Meng, X Jiang, C Liu, A Pao, PV Belichenko, ... Human molecular genetics 23 (3), 578-589, 2014 | 48 | 2014 |
| Engineered chromosome-based genetic mapping establishes a 3.7 Mb critical genomic region for Down syndrome-associated heart defects in mice C Liu, M Morishima, X Jiang, T Yu, K Meng, D Ray, A Pao, P Ye, ... Human genetics 133 (6), 743-53, 2014 | 37 | 2014 |
| Reconstitution of thymic function in HIV-1 patients treated with highly active antiretroviral therapy P Ye, AP Kourtis, DE Kirschner Clinical Immunology 106 (2), 95-105, 2003 | 35 | 2003 |
| Commensurate distances and similar motifs in genetic congruence and protein interaction networks in yeast P Ye, BD Peyser, FA Spencer, JS Bader BMC bioinformatics 6, 1-13, 2005 | 32 | 2005 |
| Metabolic host responses to malarial infection during the intraerythrocytic developmental cycle A Wallqvist, X Fang, SG Tewari, P Ye, J Reifman BMC systems biology 10, 1-18, 2016 | 30 | 2016 |
| Heterogeneity of transposon expression and activation of the repressive network in human fetal germ cells B Reznik, SA Cincotta, RG Jaszczak, LJ Mateo, J Shen, M Cao, L Baskin, ... Development 146 (12), dev171157, 2019 | 26 | 2019 |
Joel S. BaderProfessor, Biomedical Engineering, Johns Hopkins University; Founder, Neochromosome, Inc.Verified email at jhu.edu
