|A DNA integrity network in the yeast Saccharomyces cerevisiae|
X Pan, P Ye, DS Yuan, X Wang, JS Bader, JD Boeke
Cell 124 (5), 1069-1081, 2006
|A systems biology analysis of the Drosophila phagosome|
LM Stuart, J Boulais, GM Charriere, EJ Hennessy, S Brunet, I Jutras, ...
Nature 445 (7123), 95-101, 2007
|Global synthetic-lethality analysis and yeast functional profiling|
SL Ooi, X Pan, BD Peyser, P Ye, PB Meluh, DS Yuan, RA Irizarry, ...
TRENDS in Genetics 22 (1), 56-63, 2006
|Gene function prediction from congruent synthetic lethal interactions in yeast|
P Ye, BD Peyser, X Pan, JD Boeke, FA Spencer, JS Bader
Molecular systems biology 1 (1), 2005.0026, 2005
|Reevaluation of T cell receptor excision circles as a measure of human recent thymic emigrants|
P Ye, DE Kirschner
The Journal of Immunology 168 (10), 4968-4979, 2002
|Active retrotransposition by a synthetic L1 element in mice|
W An, JS Han, SJ Wheelan, ES Davis, CE Coombes, P Ye, C Triplett, ...
Proceedings of the National Academy of Sciences 103 (49), 18662-18667, 2006
|The thymus during HIV disease: role in pathogenesis and in immune recovery|
P Ye, DE Kirschner, AP Kourtis
Current HIV research 2 (2), 177-183, 2004
|Gene expression in the fetal mouse ovary is altered by exposure to low doses of bisphenol A|
C Lawson, M Gieske, B Murdoch, P Ye, Y Li, T Hassold, PA Hunt
Biology of Reproduction 84 (1), 79-86, 2011
|Reconciled rat and human metabolic networks for comparative toxicogenomics and biomarker predictions|
B EM, R KD, D BV, L ZI, K GL, Y P, W A, P JA
Nat Commun 8, 14250, 2017
|Measuring emigration of human thymocytes by T-cell receptor excision circles|
P Ye, DE Kirschner
Critical Reviews™ in Immunology 22 (5-6), 2002
|Hybrid capture-based genomic profiling of circulating tumor DNA from patients with estrogen receptor-positive metastatic breast cancer|
JH Chung, D Pavlick, R Hartmaier, AB Schrock, L Young, B Forcier, P Ye, ...
Annals of Oncology 28 (11), 2866-2873, 2017
|Intact piRNA pathway prevents L1 mobilization in male meiosis|
SJ Newkirk, S Lee, FC Grandi, V Gaysinskaya, JM Rosser, NV Berg, ...
Proceedings of the National Academy of Sciences 114 (28), E5635-E5644, 2017
|Human CST facilitates genome-wide RAD51 recruitment to GC-rich repetitive sequences in response to replication stress|
M Chastain, Q Zhou, O Shiva, M Fadri-Moskwik, L Whitmore, P Jia, X Dai, ...
Cell reports 16 (5), 1300-1314, 2016
|Retrotransposition creates sloping shores: a graded influence of hypomethylated CpG islands on flanking CpG sites|
FC Grandi, JM Rosser, SJ Newkirk, J Yin, X Jiang, Z Xing, L Whitmore, ...
Genome research 25 (8), 1135-1146, 2015
|Human chromosome 21 orthologous region on mouse chromosome 17 is a major determinant of Down syndrome-related developmental cognitive deficits|
L Zhang, K Meng, X Jiang, C Liu, A Pao, PV Belichenko, ...
Human molecular genetics 23 (3), 578-589, 2014
|Reconstitution of thymic function in HIV-1 patients treated with highly active antiretroviral therapy|
P Ye, AP Kourtis, DE Kirschner
Clinical Immunology 106 (2), 95-105, 2003
|Commensurate distances and similar motifs in genetic congruence and protein interaction networks in yeast|
P Ye, BD Peyser, FA Spencer, JS Bader
BMC bioinformatics 6 (1), 1-13, 2005
|Engineered chromosome-based genetic mapping establishes a 3.7 Mb critical genomic region for Down syndrome-associated heart defects in mice|
C Liu, M Morishima, X Jiang, T Yu, K Meng, D Ray, A Pao, P Ye, ...
Human genetics 133 (6), 743-53, 2014
|Genetic interaction motif finding by expectation maximization–a novel statistical model for inferring gene modules from synthetic lethality|
Y Qi, P Ye, JS Bader
BMC bioinformatics 6 (1), 1-15, 2005
|Metabolic host responses to malarial infection during the intraerythrocytic developmental cycle|
A Wallqvist, X Fang, SG Tewari, P Ye, J Reifman
BMC systems biology 10 (1), 1-18, 2016